Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0559 ATGGAGTTGGTGTCTTCCACTGCGCTGCCAGTTGCTCTGCAATCCGCCTTCGAGCTCGGCGTCTTCGAGGCCATAGCCAAAGCAGGTGATGATGCGAAGCTCTCTGCGAAAGAGATTGCTGATAAGATTTCCAGCAAGAACCCAGAAGCACCCACCATGCTTGATCGTGTTCTTAGGCTTCTGGCGAGTCACTCTGTGCTTCATTGCTCTGTTCTTGATGATCCTCAAGGGAAACGGAGGTTCTACAGTCTCTCCCCTGTTTCCAAATATTTCGTCACTAATGGTGACAGTGTGTCTTCTGGACCTCTTTTGGCCTTGATTCCAGACAAGGTCTTCTTGGATAGTTGGAGCCAACTGAAAGGTGCAGTAATGGAAGGAGGGAGACCGTTCAAGAGGGTTTACGGGATCGATGCCTCTGAGGATCCAAGCTCGGACCCCAGGTTCAATGAGGTTTTCAACAAAGCTATGTACAACTTCAAGATTTTGATTATGAAGAAGATTCTGGAATTCTACGAGGGTTTTGAGAGCATCAACAAAATACTGGTGGTTGTTGGGGGAATTAAAGTTGATTTGCCTCGTGTCATAGGACATGCCCCTGACTACCCTGGTGTTGAACATGTGAGAGGAAATATGTTTGAAAGTGTTCCTGAAGGAGATGCCATTTTTATGGAGTGGATTCTTCGTGATTTGAGCGATGAACGTTGCCTGAAGCTGTTAAAGAATTGCTACAACGCTATTCCTGACGATGGAAAAGTGATTGTAGTAGAATTCATTCCTCCCATAGAGCCTGAGACTCATACTGCTGCGAAGACTGCTTTCCAACTTGATGTCCTCCTAATGATGACCCAAAACCTGGGAGGCAAAGAGCGAACCAGAGAAGAGTTCATGGAATTGGCAACATCGGCTGGATTTAGTGGCATCAGATTCGTCGGCCAAGTCTCTGGCATCTGGGTTATGGAGTTCGTCAAAGCAGGGGAAGAGGAACGGAAGGCCAAGTCTGTGACTCGTTAG 1011 0.4728 MELVSSTALPVALQSAFELGVFEAIAKAGDDAKLSAKEIADKISSKNPEAPTMLDRVLRLLASHSVLHCSVLDDPQGKRRFYSLSPVSKYFVTNGDSVSSGPLLALIPDKVFLDSWSQLKGAVMEGGRPFKRVYGIDASEDPSSDPRFNEVFNKAMYNFKILIMKKILEFYEGFESINKILVVVGGIKVDLPRVIGHAPDYPGVEHVRGNMFESVPEGDAIFMEWILRDLSDERCLKLLKNCYNAIPDDGKVIVVEFIPPIEPETHTAAKTAFQLDVLLMMTQNLGGKERTREEFMELATSAGFSGIRFVGQVSGIWVMEFVKAGEEERKAKSVTR 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0559 336 Gene3D - 1 91 IPR036388 -
Glsi06g0559 336 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 323 IPR016461 GO:0008168
Glsi06g0559 336 PANTHER O-METHYLTRANSFERASE 3 308 IPR016461 GO:0008168
Glsi06g0559 336 FunFam Caffeic acid 3-O-methyltransferase 1 91 - -
Glsi06g0559 336 SUPERFAMILY "Winged helix" DNA-binding domain 1 94 IPR036390 -
Glsi06g0559 336 Gene3D Vaccinia Virus protein VP39 93 185 IPR029063 -
Glsi06g0559 336 Gene3D Vaccinia Virus protein VP39 186 323 IPR029063 -
Glsi06g0559 336 PIRSF O-mtase 1 323 IPR016461 GO:0008168
Glsi06g0559 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 97 321 IPR029063 -
Glsi06g0559 336 Pfam Dimerisation domain 12 62 IPR012967 GO:0046983
Glsi06g0559 336 Pfam O-methyltransferase domain 187 305 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0559 Glsi-ChrGlsi06 5190517 5192968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0559 1 323 Monolignol Biosynthesis Gene Families AT5G54160 47.507 1.63e-106 314