LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0554	ATGTTACCAGTTTCTGTTGTTCTTTTTGGACTTCTTTCCTGCTTCCCCTTTTCTTGTTCCCTCCTACAAGAGCAAGGAAAACTACTAGAATCCACCTTGCTTCCCAATTCTTGCAATGAAACATGTGGGAAACTCCATGTTCCTTTTCCATTTTATGTGAACACTTCTTGTGGGTCAATTTCAAGTGCTTTCCATCTCTCTTGCGCAAATTCATCCACCCTTTTGCTCAAAATTAGATCAGAAAGCTACCCGGTGATTGAATTCTTCCCGGATGGTGTACTAGTAGACTTCCCAGGCACATTTTCCTGCCGTCAGTACAATGACTTGAACTCGTTTGGTAAAAGTTTTGTGAGAAATGAGAACTTTGGGGTCTCAGTTGACAATGTTATTGGCCTCTATGACTGCGAGGATTCCTCTCTGTGCAGAGCAGATTGTGAAACAGTCGACTTGCCTGGTTGTGATGGAAGTGGTAGTGGCTCCCTTGGCTGCTGCTATCCACTCTCAGACCACAGCATATGGCATATTGGAGAAGGGTTTTCAGTGTTTTCTCAGTATGGATGCAGGGGATTTTCTAGTTGGGCTGTTTTGAGAGGGTCAAATTCAGGAAAGCGTGGGGTCAAATTGGAATGGGCTATTCCTAATCCTAAGAACTCCTCCAAGCCAGTTTGTGCAAGGAATGCAGGCATGGTCAATGCTATATCAATTGAGGGAGGGGCAAGGTGTGTCTGTCAGGATGGATATGTTGGTGATGGATTTGCAAACGGAACAGGATGCTTGCAGTCCTGTATCAAGGATGGACAGGAAGCCTATGGCAGTGACTGCTACATCAAAAGACATGATCAAAGGAAATTTGTCATCATTGCTGGAATCCTTGGTCCAGTTCTTATTGTTGCAGCCTTGGTGGCACTATTTTATCTGCTTAAAAGACCAGCAAAACCAGGGATGTTTGACACAGAGCAGGTTTACTATCACAACACCTCCTTTCGAAAGGCTGGTAGAACTCGATTATTCAGCCTCCATGAGCTAGAGGAAGCCACCAAAGGTTTTGAAGAGGGCCAGAAACTTATGCACAGCAATAATGGGTCAATTTTTGCTGGAGTTCTTGGGGATGGATCCCACATAGCTGTCCACAAGTTACAATGTGAAAATGAGAAAGACCTTATTCAAGTCCTCTCACAAATTGAGGTTCTATCTGCTATTGTACATAGGAACATGGCTCGCCTTCTTGGATGCTGTATAGATTCTGGCTACCCTTCTCTAGTGGTCTATGAGTATCCTGCAAATGGTACCCTGGAGGAACATTTACACCAAAGCAAGGGACAAAAGCTTTGTTTAGACTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTGTACTTGCATTCTTACATTATGAAAATTCTCCTCCTATATTCCACCACAACCTTAAATCTGGCTGCATCTTCCTAGATGATGATTTTTCTGTCAAAATAGGAGGATTTGGGCTAGTTAATTCCAAATTTAACTATGGTTCTCAAATGTATGACAACAATGAAGGTTTTTACTTCTGCAAAAATGATGTTTATGACATGGGTGTGGTGCTTTTTGAGATTATTTCAGGCTCAAATCACTTGGACTCACCAACTGCAGCACTGCAGAAAATAAGGGCTGGAAAACTAGAAGAAATTGTTGATCCACTTCTCTACTATCACGAGCAGCCACATTCGCGCCAAGAGCAAATACAGATAATTGCAGACCTCGCAACAAGATGCCTGCTATTTGGTGCAGATGGAAAGCTAGGAATGATTGATGTTGCAAGGGAGTTAATACACATAACAAAAGAAAGTGTTAGTGTTGATGGAGGAGTTATGAGAGGACCTGCTCTGGAGGAGACATTCTCAAACTCTAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGTATATGAGTACTCAGCCAGAGAAAAGTACTGAAGCTGCAGAAAACCGCACAGTTCCCCGTCTGAATCAAAGGATTCTTTCATCTTTGTCAAGGAGATCAGTTGCTGCCCACCCTTGGCATGATCTTGAGATTGGACCTGAAGCTCCCAATATTTTCAATTGTGTTGTGGAGATCACTAAAGGAAGCAAGGTCAAATATGAACTTGACAAGAAGACTGGATTGATCAAGGTTGATCGCATTTTGTACTCTTCTGTTGTTTATCCTCATAACTATGGCTTCATCCCTCGTACCCTTTGTGAAGACAATGATCCACTTGATGTCTTGATCCTTATGCAGGAACCAGTTCTTCCTGGTTGTTTCCTGAGAGCCAGGGCCATTGGATTGATGCCAATGATTGACCAGGGGGAAACAGATGATAAGATTATTGCTGTATGCGCTGATGATCCAGAGTACAAGCACTACACTGACTACAAAGAACTCCCACCCCATCGCCTATCTGAGATCCGGCGCTTCTTCGAAGATTACAAGAAGAATGAGCATAAGGAGGTAGCTGTTAATGAGTTTTTGCCTCCTTCCACTGCTACGGAAGCCATCCAGTACTCAATGGATCTTTATGCGGAGTATATCCTGCGCAGCTTGAGGCAATAG	2577	0.4315	MLPVSVVLFGLLSCFPFSCSLLQEQGKLLESTLLPNSCNETCGKLHVPFPFYVNTSCGSISSAFHLSCANSSTLLLKIRSESYPVIEFFPDGVLVDFPGTFSCRQYNDLNSFGKSFVRNENFGVSVDNVIGLYDCEDSSLCRADCETVDLPGCDGSGSGSLGCCYPLSDHSIWHIGEGFSVFSQYGCRGFSSWAVLRGSNSGKRGVKLEWAIPNPKNSSKPVCARNAGMVNAISIEGGARCVCQDGYVGDGFANGTGCLQSCIKDGQEAYGSDCYIKRHDQRKFVIIAGILGPVLIVAALVALFYLLKRPAKPGMFDTEQVYYHNTSFRKAGRTRLFSLHELEEATKGFEEGQKLMHSNNGSIFAGVLGDGSHIAVHKLQCENEKDLIQVLSQIEVLSAIVHRNMARLLGCCIDSGYPSLVVYEYPANGTLEEHLHQSKGQKLCLDWYRRLTIAAETASVLAFLHYENSPPIFHHNLKSGCIFLDDDFSVKIGGFGLVNSKFNYGSQMYDNNEGFYFCKNDVYDMGVVLFEIISGSNHLDSPTAALQKIRAGKLEEIVDPLLYYHEQPHSRQEQIQIIADLATRCLLFGADGKLGMIDVARELIHITKESVSVDGGVMRGPALEETFSNSSLLQMISMSPDSMYMSTQPEKSTEAAENRTVPRLNQRILSSLSRRSVAAHPWHDLEIGPEAPNIFNCVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQEPVLPGCFLRARAIGLMPMIDQGETDDKIIAVCADDPEYKHYTDYKELPPHRLSEIRRFFEDYKKNEHKEVAVNEFLPPSTATEAIQYSMDLYAEYILRSLRQ	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0554	858	SUPERFAMILY	Protein kinase-like (PK-like)	330	603	IPR011009	-
	Glsi06g0554	858	ProSitePatterns	Inorganic pyrophosphatase signature.	744	750	-	-
	Glsi06g0554	858	FunFam	Putative WAK-related receptor-like protein kinase family protein	427	616	-	-
	Glsi06g0554	858	Hamap	Inorganic pyrophosphatase [ppa].	693	849	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	Pfam	Inorganic pyrophosphatase	697	848	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	ProSiteProfiles	Protein kinase domain profile.	349	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0554	858	Pfam	Wall-associated receptor kinase galacturonan-binding	38	87	IPR025287	GO:0030247
	Glsi06g0554	858	Pfam	Protein tyrosine and serine/threonine kinase	352	536	IPR001245	GO:0004672\|GO:0006468
	Glsi06g0554	858	SUPERFAMILY	Inorganic pyrophosphatase	674	853	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	Gene3D	Inorganic pyrophosphatase	676	854	IPR036649	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	CDD	pyrophosphatase	693	846	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	PANTHER	INORGANIC PYROPHOSPHATASE	631	857	IPR008162	GO:0000287\|GO:0004427\|GO:0005737\|GO:0006796
	Glsi06g0554	858	FunFam	probably inactive receptor-like protein kinase At2g46850	321	425	-	-
	Glsi06g0554	858	Gene3D	Transferase(Phosphotransferase) domain 1	427	615	-	-
	Glsi06g0554	858	FunFam	Soluble inorganic pyrophosphatase 4	676	854	-	-
	Glsi06g0554	858	Gene3D	Phosphorylase Kinase; domain 1	320	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0554	Glsi-ChrGlsi06	5139271	5147822	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0554	38	606	Receptor kinase-like Gene Family	AT2G23450	30.956	1.45e-58	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-3	Glsi06g0554		PK_Tyr_Ser-Thr	1.1e-17	CL0016