Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0553 ATGGAGGATGGGAGTAGGGTTCCAGGGACAGTTGAGGATGACCCAGTTACTCGCTCCTCTCCCTCCTACTGGCTGGACGCCTGTGAGGACATTTCCTGCGATCTCATTCACTTTGATGATGGGTCTATCGTCTCAGAACAGGTTGATAACAATTTGATACAGGATGGACTTGTTAATGATTTCTTCGGCGGAATTGAACATATTCTGGACAGTATTAAGAACGGTAGTGGTCTACCTGTTGCCAATGATTCCATTGTCACTGGGAATGGAAATCAAGCTGGGGCAACATGGTTGCAGGACGATGTGTCTGCACTGCAAGCTGAAGACGGTAGTCGCAAAGATAATTTTGTGAAGAATGGGTCCGCTGGTGAAAAACATGGTCGTACAATTGAAGTATGTGAGCGTTCAGAAGCTGACAGTAACGGATACAAGAAGGTATCAATTGGCAAGGAAGAAGCGAGAACGTTGGATGATTCTTCTAAGGAAAATGGAAGTCTGGGGCATGGAAATAGAGGCGGTGATCTATCTAGGGAGCATCATGTGGATGGTGAAGAAAGAAACATCAAAAGGGCTCGGCTTAGCAACTGTAAGAATGAGAGGCCTTTTTCTGGCAGATCGAATTATCATCCCAAGGAAAGGGAGAGGTGTCCGAGTAAGAAGAGAGCCCGGGAATGGGATGAGGTTGATAGGAAGGAAAAAGATAGTGTGAGAAAAAGGGAACATTATAGTAGTTGTGGTAGGAGAGATGTTAGAGATAGAGATTGGAGGGATAGAGAAAGGGGTTACTGGGAGAGGGATAAGTCAGGCTCCAATGATATGATCTTTCGCATAGGCATTTGGGAAGCTGATCGTAATCGAGAAGGAAAGATGGCTAATGACATTAAACAGGAATGTGATGGAAGGGTTGAGAAGAAACCTGAGGAGCCTAAGGAGAGAGTTCCCGAGGAACAAGCTAGACAGTACCAGTTGGATGTTCTTGAGCAGGCGAAGCAGAAAAATACTATAGCATTTCTTGAAACTGGAGCAGGGAAGACCCTAATTGCTGTTCTTCTCATTAAAAGTATTCATGAGAGTTTACAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCAGAGGTAATACGGGAGCGCACTGGTTACCAAGTGGGCCACTACTGTGGAGAAATGGGGCAGGATTTTTGGGATGCTCGAAGATGGCAGCGCGAATTTGAAATGAAACAAGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAGCAATCAATCTCCTTATTCTGGATGAATGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCTGAGTTCTATCATACAACACCCAAAGAGAAGAGACCATCGGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAACCTTGAAAGTAAGCTAGATTCTATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTACCAATGCCCTCCGAAGTTGTGGTGCAGTATGACAAAGCAGCCAGTTTATGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGAAGTAAATGGCAGTTTATGGGGGCTAGAGATGCTGGAGCCAAAGAAGAGCTACGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGTCAGTGGTGTGCATACAAGGTTGCACATTCTTTTCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGAGTAAAGTTGTCTCTCTTCTACAATGTCAATTGTCCGAGGGTGCAGTGTCTGACAAGAATGCTGGAGTTTCTGACTCAGAATGTGGTGTGGCACATGGTGGATCTCAAACTGATGAGATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCGTGATAGGAGCTGCTGTGGCTGATGGAAAGGTGACGCCCAAGGTGCAGGCTCTGATCAAAATACTTCTCAAATATCAGCACACGGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTCGTATCTGCTTTAGTTCTACCCAAGGTTTTTGTAGAGCTTCCATCTCTGAGTTTTGTGAAGTGTGCAACCTTGATTGGTCACAACAATAGTCAGGAAATGAGGACCTCCCAAATGCAGGATACAATTGCTAAGTTCCGTGATGGACGAGTTACATTGTTAGTTGCCACTAGTGTTGCTGAGGAAGGACTTGATATCCGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACAGTTTTGGCATACATTCAGTCTAGAGGCCGAGCCAGAAAGCCTGGGTCAGATTACATCCTGATGGTTGAGAGGGAAAATTTGTCGCATGAAGCATTCTTAAGGAATGCCAGGAATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGATACTTCAAGGTTTATTTCAGTAGATACTAGGCCAGGAACTGTTTACCAGGTCGAGTCAACTGGTGCAGTTGTGAGCTTGAATTCTGCTGTAGGTCTCATCCACTTCTACTGCTCCCAGCTGCCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAGAAACCAGGAGGCCCCACCGAATATTCTTGCAAGCTTCAACTGCCGTGTAATGCTCCATTTGAAAATCTTGAGGGTCCTATATGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGACAAAGGAAGTGGGGAAGAAAGAGAAAAGGCTGAGCAAACTGAAGAAGGAGATCCACTTCCGGGGACTGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCTGACATACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTGGCAGCAAAGTGCATCATCTTTATATATATGCTGTTAGGAGTGTAGATGTAGGCCATTCGAAAGATCTGTTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCACGTACCATGACTGCAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATAACTGAGAGTCAGTTGGCATCCCTGAAAAGATTTCACGTAAGACTAATGAGCATTGTCCTGGATGTGGATGTTGAACCATCCACCACTCCTTGGGATTCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCACCTGGTTGAGACAATAATTGAAACAGATGCATGGAAAAATCCCCTTCAGAGAGCTCGACCAGATGTTTACCTTGGCACAAATGAGAGAACATTAGGCGGAGATAGAAGGGAATATGGATTTGGAAAATTGCGTCATGGCATGGTTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCACAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAATAGAGAAGCTGTGCAACCGCAAAAGCATATTAACATGGCTACCCAAGGGAAATTGATGATGGCAGATATCTGTACTAATGCAGAGGATCTGGTAGGGAGAATAGTGACAGCTGCTCACTCGGGGAAGAGATTTTATGTTGATTCAATACGCTATGATATGACTGCAGAGAATTCTTTTCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGCTCATATGCCGATTACTACAAGCAAAAGTATGGAGTTGAATTAATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGGTCATGAAGGTGAATCTGAAGAGACTCATGACAAAACCTATTATGTTTTCCTTCCTCCTGAGCTGTGCCTTGTACACCCATTACCTGGATCACTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAATTCAGCTTAAGAATATGATAAATTATCCTGTCCAATCTTCAAAGATCTTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCGGAGCTTCTAGGAGATGCTTACTTGAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAATACCCTCAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTGACTAAAGGACTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTATTTGATGAGGATAGCAAGGATGGAGACTCATCTTTATTTGATCAGGAGGGATTGATTTCTAATACTGGGAGGAATGATCACCTTGCTGATGGTTATGATGATGATGAAATGGAAGATGGAGAACTTGAGAGTGACTCAAGTTCTTATAGAGTCCTGTCCAGCAAGACACTTGCAGATGTTGTAGAAGCACTGATTGGGGTGTATTATGTCGAAGGTGGAAAGAATGCTGCTAATCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATCAGTTGGATTGTTGTGCAAGAAAGCCAAGTAATGTTCCAGAGAGTATACTTAGGAGTGTTGACTTTGATGCTTTAGAAGGTGCTTTAAACATTAAGTTTAGTGACAGGGGGCTGCTGGTAGAAGCCATAACTCATGCCTCAAGACCATCTTCGGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTGATTACCAGGCACTTGTTTTTCACTTACACTGATCTGCCGCCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAACTTTGCACGTGTTGCAGTTAAACACAATCTTCATTTGCATCTTCGGCATGGGTCCAGTGCCCTAGAAAAACAGATTACAGAATTTGTGAAGGAAGTTCGAGATGAATTGTTAAAGCCAGGGTTTAACTCCTTTGGTTTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTGGACAGTGAGCGGAATACTTCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCTGAGACTCTGCCAATGCATCCCGTGCGTGAGCTACAAGAACGATGCCAGCAGCAGGCTGAAGGCTTAGAATACAGAGCATGTCGAATTGGCAATTTGGCTACTGTCGAAGTGTTCATTGATGGGGTGCAAATAGGGGCTGCCCAAAATCCACAAAAGAAAATGGCACAGAAATTAGCAGCTAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTAGCAAAAACCAGGGAGAAGGATGATGAAAATGGTAAGAAGAAGAAGAATGGAAACCAGACATTCACCAGACAAACATTAAATGATATCTGTTTGCGAAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAACGAGGGTGGTCCGGCACATGCAAAGAGGTTCACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGCGTGGGAGAGCCAATGCCAAGCGTCAAGAAAGCCAAGGATTCTGCTGCCGTTCTTCTCTTAGAACTACTGAACAAATTATACTCGTAA 5940 0.4365 MEDGSRVPGTVEDDPVTRSSPSYWLDACEDISCDLIHFDDGSIVSEQVDNNLIQDGLVNDFFGGIEHILDSIKNGSGLPVANDSIVTGNGNQAGATWLQDDVSALQAEDGSRKDNFVKNGSAGEKHGRTIEVCERSEADSNGYKKVSIGKEEARTLDDSSKENGSLGHGNRGGDLSREHHVDGEERNIKRARLSNCKNERPFSGRSNYHPKERERCPSKKRAREWDEVDRKEKDSVRKREHYSSCGRRDVRDRDWRDRERGYWERDKSGSNDMIFRIGIWEADRNREGKMANDIKQECDGRVEKKPEEPKERVPEEQARQYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFEMKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVQYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLSKVVSLLQCQLSEGAVSDKNAGVSDSECGVAHGGSQTDEIEEGELPDSHVVSGGEHVDVVIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFVELPSLSFVKCATLIGHNNSQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERENLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRFISVDTRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKAEQTEEGDPLPGTARHREFYPEGVADILKGEWILSGKDAGSKVHHLYIYAVRSVDVGHSKDLFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTAKASLVFRGSIDITESQLASLKRFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVGDKSVDPMNQIDWHLVETIIETDAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMVFGQKSHPTYGIRGAVAQFDVVKASGLVPNREAVQPQKHINMATQGKLMMADICTNAEDLVGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALTKGLQSYIQADRFAPSRWAAPGVLPVFDEDSKDGDSSLFDQEGLISNTGRNDHLADGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDQLDCCARKPSNVPESILRSVDFDALEGALNIKFSDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHLHLRHGSSALEKQITEFVKEVRDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSERNTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQIGAAQNPQKKMAQKLAARNALAALKEKEVAKTREKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0553 1979 Pfam Dicer dimerisation domain 913 1001 - -
Glsi06g0553 1979 CDD RIBOc 1433 1616 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 Gene3D - 1907 1977 - -
Glsi06g0553 1979 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1901 1976 IPR014720 -
Glsi06g0553 1979 ProSiteProfiles Ribonuclease III family domain profile. 1640 1788 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 SMART riboneu5 1433 1618 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 SMART riboneu5 1655 1811 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 1001 1025 - -
Glsi06g0553 1979 Pfam Type III restriction enzyme, res subunit 319 484 IPR006935 GO:0003677|GO:0005524|GO:0016787
Glsi06g0553 1979 Gene3D Ribonuclease III domain 1637 1811 IPR036389 GO:0004525|GO:0006396
Glsi06g0553 1979 Gene3D - 1812 1891 - -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 141 161 - -
Glsi06g0553 1979 FunFam Endoribonuclease dicer-like protein 1416 1610 - -
Glsi06g0553 1979 Gene3D paz domain 1270 1392 - -
Glsi06g0553 1979 FunFam Endoribonuclease dicer-like 1 908 1009 - -
Glsi06g0553 1979 SMART ultradead3 314 517 IPR014001 -
Glsi06g0553 1979 Gene3D Dicer dimerisation domain 908 1010 IPR038248 -
Glsi06g0553 1979 SMART helicmild6 754 840 IPR001650 -
Glsi06g0553 1979 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 913 1008 IPR005034 GO:0016891
Glsi06g0553 1979 Gene3D - 312 556 IPR027417 -
Glsi06g0553 1979 FunFam endoribonuclease Dicer homolog 1 1907 1976 - -
Glsi06g0553 1979 ProSitePatterns Ribonuclease III family signature. 1675 1683 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 CDD DEXHc_dicer 317 516 - -
Glsi06g0553 1979 SUPERFAMILY dsRNA-binding domain-like 1770 1884 - -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 172 196 - -
Glsi06g0553 1979 FunFam Endoribonuclease dicer-like 1 1635 1809 - -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 204 243 - -
Glsi06g0553 1979 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1814 1877 IPR014720 -
Glsi06g0553 1979 CDD RIBOc 1656 1811 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 PANTHER DICER-RELATED 1268 1879 - -
Glsi06g0553 1979 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 885 IPR001650 -
Glsi06g0553 1979 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1901 1974 - -
Glsi06g0553 1979 Gene3D - 711 877 IPR027417 -
Glsi06g0553 1979 ProSiteProfiles Ribonuclease III family domain profile. 1437 1598 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 FunFam Endoribonuclease dicer-like protein 313 553 - -
Glsi06g0553 1979 SUPERFAMILY RNase III domain-like 1639 1810 IPR036389 GO:0004525|GO:0006396
Glsi06g0553 1979 Gene3D Ribonuclease III domain 1416 1612 IPR036389 GO:0004525|GO:0006396
Glsi06g0553 1979 FunFam Endoribonuclease dicer-like 1 712 874 - -
Glsi06g0553 1979 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 502 IPR014001 -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 1879 1896 - -
Glsi06g0553 1979 Pfam Ribonuclease III domain 1451 1598 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 Pfam Ribonuclease III domain 1675 1787 IPR000999 GO:0004525|GO:0006396
Glsi06g0553 1979 CDD SF2_C_dicer 718 848 - -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 141 243 - -
Glsi06g0553 1979 SUPERFAMILY PAZ domain 1269 1394 IPR036085 GO:0005515
Glsi06g0553 1979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 848 IPR027417 -
Glsi06g0553 1979 FunFam Endoribonuclease Dicer 1 1274 1392 - -
Glsi06g0553 1979 SMART PAZ_2_a_3 1258 1418 IPR003100 GO:0005515
Glsi06g0553 1979 Pfam Helicase conserved C-terminal domain 721 838 IPR001650 -
Glsi06g0553 1979 ProSiteProfiles PAZ domain profile. 1280 1394 IPR003100 GO:0005515
Glsi06g0553 1979 Pfam PAZ domain 1279 1414 IPR003100 GO:0005515
Glsi06g0553 1979 SUPERFAMILY RNase III domain-like 1410 1617 IPR036389 GO:0004525|GO:0006396
Glsi06g0553 1979 CDD DSRM_DCL_plant 1907 1968 - -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 1879 1899 - -
Glsi06g0553 1979 SUPERFAMILY dsRNA-binding domain-like 1905 1975 - -
Glsi06g0553 1979 SMART DRBM_3 1815 1876 IPR014720 -
Glsi06g0553 1979 SMART DRBM_3 1902 1975 IPR014720 -
Glsi06g0553 1979 MobiDBLite consensus disorder prediction 999 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0553 Glsi-ChrGlsi06 5124676 5137439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0553 737 880 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 9.47e-07 51.6