Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0551 ATGAAGATTGAAGGAGTCCAGAATTCAAGGTGGGTGACTCATAATTCATATATGGAGTTGCTGATGAAAGAAGTAAAAGGGTATTCTGATAGAGAAGAAGATGTAGAGGAAGAAGAAGCAGAGATAAGAGATGGAAGCTGCAATAAGTACTACCCCTTTTTCTCAACCTCTTCTCCCAGCTCAACAAATTATAAAACTCATCATCATCATCACCAAAATTCATGGTTGGGGCTTCATGATCATCACTCTCCAGAAGCCACTACCACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTACACCACCAAGATGCAGCACCCCCAGCTTCCAATTTCATCAATCTCATGGACTTATCACTTGGAAACAAAAATGATGAAGTTAATTTCCATGGAGGTAGCAGTAGCAACACTGGCCATAATTGTAACGATGATGTTCCTATTGAGAAAGAGCACATGTTCGATAAAGTTGTGACGCCAAGCGATGTGGGCAAACTGAACCGCCTAGTGATTCCAAAACAACATGCTGAGAAGTACTTCCCCCTGGACTCTTCCTCCAACGAGAAAGGGCTGCTTCTGAATTTCGAAGATCAGAACGGGAAACTATGGCGGTTCAGGTACTCCTATTGGAATAGCAGCCAGAGCTATGTTATGACAAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTCGACGCAGGCGACATTGTGTCGTTCCGGCGAGGGGTCGGGGAATTATATAGGCATAGATTGTACATAGATTGGAGGCGCAGACCTGATCATCATCAATATTGCCCTGATCATCCCACAGGCACCTTGATTGCACCTTTGCTTCTTCCGAATCATCAGCCCCATTTGTCTCAGTACTCTATCAGATGGGGTGGCAGATTATACTCGCTGCCTTCGCCCAGCCCGGCCCGGCACCACGAGCATTTGCAGCAGCTGAATTACAATAATATGTTTCTTCACCAGCACCAGCACCAGCACCAGCACCAGTTCCATTATAATGAGGTGAGTTCGGGATCTGGGTCTGTATATTACTTGAGATCAGCATCAACAATGGGTGATCAGAACTTGATGGGGCAACAAGATGGAGGAAATAATGCTCCGATGATCATTGATTCTGTGCCGGTTTCTCATCATGGTCATCCCCACCATTGTAAGAACAGTAGTACTAACACTGCAGCAAAAAGGCTTAGGCTTTTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTACACCAGCTGAAGAACCCAAATTCTTTTCATTAATCTCGTCATCATCAACTTCTTCTGTTCCACCATATTTGAGGGTACCCCATGAAGATCCACTTTCATCATCAGCAAGGTTTCAAAATCAGGAAGGGGAAACTGCGATGCTTTTTGATTTGGATCCCTCTTTGCAATACCGTCAGTGA 1425 0.447 MKIEGVQNSRWVTHNSYMELLMKEVKGYSDREEDVEEEEAEIRDGSCNKYYPFFSTSSPSSTNYKTHHHHHQNSWLGLHDHHSPEATTTTESHNSSSGLGLHHQDAAPPASNFINLMDLSLGNKNDEVNFHGGSSSNTGHNCNDDVPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDQNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFRRGVGELYRHRLYIDWRRRPDHHQYCPDHPTGTLIAPLLLPNHQPHLSQYSIRWGGRLYSLPSPSPARHHEHLQQLNYNNMFLHQHQHQHQHQFHYNEVSSGSGSVYYLRSASTMGDQNLMGQQDGGNNAPMIIDSVPVSHHGHPHHCKNSSTNTAAKRLRLFGVNMECASSSSSSTPAEEPKFFSLISSSSTSSVPPYLRVPHEDPLSSSARFQNQEGETAMLFDLDPSLQYRQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0551 474 CDD B3_DNA 152 241 IPR003340 GO:0003677
Glsi06g0551 474 SMART B3_2 154 259 IPR003340 GO:0003677
Glsi06g0551 474 FunFam B3 domain-containing protein 147 267 - -
Glsi06g0551 474 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 415 IPR044800 GO:0003700
Glsi06g0551 474 MobiDBLite consensus disorder prediction 74 106 - -
Glsi06g0551 474 ProSiteProfiles B3 DNA-binding domain profile. 154 259 IPR003340 GO:0003677
Glsi06g0551 474 SUPERFAMILY DNA-binding pseudobarrel domain 151 254 IPR015300 -
Glsi06g0551 474 Coils Coil 18 38 - -
Glsi06g0551 474 MobiDBLite consensus disorder prediction 454 474 - -
Glsi06g0551 474 Pfam B3 DNA binding domain 154 258 IPR003340 GO:0003677
Glsi06g0551 474 Gene3D - 148 266 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0551 Glsi-ChrGlsi06 5108092 5110512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0551 116 411 RAV Transcription Factor Family AT2G46870 49.502 1.79e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi06g0551 B3 2.2e-28 CL0405