Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0543 ATGGTCACTCCGATGCAATCCCCAGCACCCCAAACTCCTCTTACCAGATTGGCTGATGACACCCATATGTCCCCTTCTCCTTCTTCTTCATCTGCTCCTCCCTTTGTGTGTTCTTCGATGAAGAAGGATCAGAAAGACACTGCCTTTTGCTTCTGGGTATCTGTTCTGATGACACAGGAATCTCCCAGACAAAGACAAAGACCAACCCCATCAACATCAGGAAGACCCTCTTCCTCTGCTTCTTCAATTTACATGGTTCTAAGGTTAATGGTCTTTGTCATAATGCCGTTAGTTCTGTCTTGCTTCGTTGTTACTGCAGCCTCCTCTTGTCACCAACTGGATAAAGACTCACTCTTGGCTTTCTCCAGAAACATATCCACGTTCTCTCCTCACCCTCCCCTCAATTGGTCTGCTTCTGTTGATTGCTGCTTTTGGGAAGGGATTAATTGTGGTGAGAATAAGGATAATGGGGATCAGCGAGTTATCCATCTATTGCTGCCATCTAGAGGTCTCACTGGCTTCATCTCCCCATATCTGACAAACCTTACTGGTCTCTCTCAGCTTAATCTCTCCCATAATCGATTATCTGGTACTCTCCCAACCCAATTTTTGTCACTCCTTAATCACCTGCAGATTCTTGATTTGAGCTATAACCATCTCTCTGGTGAATTGCCAACCTTTGTTGCTAATAACGGCACTACTAGTATTATCCAGGAGCTTGATTTGTCTAGCAATATATTTCATGGAGCACTCCCATCTTCTGTCCTTCAGTACCTAACAGCTGCAGCAATGGGAGGGACTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACAGGTCAAATTCCCACTTCTCAACTTTGCATTAGTGAGAGTGCTTCCTCTCTTTCCTCTCTCAGATTCTTGGATGTTTCCTCCAACGATTTCAATGGTTCAATTCAACCTGGATTGGGAGCATGTTTCAAGCTCGAGATATTTCGAGCAGGTTTCAATTTTCTCTCTGGGCCTCTTCCTGGTGACATTTTTGATGCTCTTTCCCTCAGAGCAGTCTCCTTGCCCCTCAATAAACTCTCTGGAAATATTGGTAATGAGATTGTTAGCCTTACTAACCTCACAGTTCTGGAGCTCTACTCCAATGATTTCAGAGGTCCCATCCCACGGGATATTGGTAAGCTATCCAAGTTGGAAAAGCTACTCCTTCATATCAACAATTTGACTGGTACTCTGCCTCCATCTCTGATGAACTGTGTCAATCTTGTCAACTTAAATTTAAGGGTCAACTCCTTGGAGGGAAATCTCTCAGCATTCAATTTCTCCGGATTCCTCCAACTTACTACGCTTGATCTTGGCAACAATAATTTTACGGGTAATTTACCAACAACCCTTTATGCATGCAAGTCACTAGCTGCAGTAAGGCTAGCTTTTAATCATCTTGAGGGACAAATCACCCCAGACATACTTGGACTTGAGTCTTTGTCTTTTCTATCAATATCTACCAACTACCTAAGGAATTTCACGGGAGCTATGAGGATACTTACGGGTCTCAAGAACCTTAGTACCCTTGCCCTCTCCAAGAATTTTTATAATGAAATGATGCCAAATGATGAGAACTTAATAGGCCCAGATGATTTTCAAAAGCTTCAAGTTCTAGGCTTGGGTGGTTGTAATTTTACAGGTCAAATACCAGGCTGGCTTGCAAAGCTTAAAAAACTCGAGGTCTTGGATTTGTCCTATAATCTAATCACTGGTTCAATTCCTCCTTGGTTGGGCACACTCCCTCAACTTTTCTACATAGACTTATCTTATAACCTCATAACAGGAATATTTCCCACGGAACTCAGAAGAATTTCAGCACTAACGTCACAAGAGGCAAATGATAAAATAGAAAGGACTTACCTAGAGTTACCCGTCTTCATTGATTCCAACAATGCCACTCAGCAGCAATATAATCAGCTTGCCAACCTACCACCGGCAATATATCTGAGAAACAACAGCCTCGGTGGCAGTATCCCCGTAGAGATTGGCCTACTGAAAGTCCTTCATCAATTGGATCTGAGTAACAACAACTTCTCTGGCAGTATTCCGGTTCAAATTTCTAACTTGACTAACTTAGAGAGATTAGACCTCTCAGGAAACCGGCTATCTGGTGAAATTCCTGATTCTCTCAAAAGCCTACATTTCTTGTCTTTTTTCAGTGTGGCGAGCAATGATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCCCCCCTTCCAGCTTTGAAGGAAACCAACAATTGTGTGGTTCAGCTGTTCAACGCTCTTGTCCTAATCAACAAGGTGGTGTTGCAACTCGTCGCAGATCAAAAAACAAAATAATGATCGGACTTGTCATTGCAGTCTGTTTTGGCACTGTTTCTATCACGACTGTGTTGACACTCTGGATACTTTCCAAGAGGAGGATCAATCCAGGAGGAGACCCTGACAAGATTGAACTAGAATCAATTTCTGCCAACTCCAACAGTGGGATTCATCCTGAGGTGGATAAGGAGACCAGCCTAGTGGTATTGTTCCCCAATAATAAAAATGAATTCAAGGATCTTACTATATCTGAAATCTTGAAAGCCACTGAAAATTTCAGTCATGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTGGGTCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGGCTTTGTCAACAGCCCAACATGAGAATCTGGTTTCTTTGCAAGGTTACTGTGTGCATGATGGCTTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTATTGGTTGCATGAAAAGGCTGATGGTGCATCTCAACTTGATTGGCCAACTCGACTGAAGATAGCACAGGGTGCGGGTTGTGGTTTGGCTTACATGCACCAGATATGTGAACCACATATTGTGCATCGCGATATAAAGTCAAGCAATATCCTCCTCAATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGATTATCCCGATTAATTCTTCCTTATCACACTCATGTCACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCTGAGTATGGACAAGCATGGGTGGCCACTCTGAGGGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTCGACATTTGCAGGCCAAGAATGTCAAGGGAGTTGGTTGGCTGGGTGCAACAAATGAGGAGTGAAGGAAAACAAGACCAAGTCTTCGACCCCCTTCTCAGAGGGAAGGGTTTTGAAGAGGAGATGCTGCAGGTACTCGATGTGGCCTGCATGTGTGTCAACCTGAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGATTGGCTGAAGAATGTAGGATCAGCCAACCAAAACCAGAATAAAGATTAG 3480 0.4302 MVTPMQSPAPQTPLTRLADDTHMSPSPSSSSAPPFVCSSMKKDQKDTAFCFWVSVLMTQESPRQRQRPTPSTSGRPSSSASSIYMVLRLMVFVIMPLVLSCFVVTAASSCHQLDKDSLLAFSRNISTFSPHPPLNWSASVDCCFWEGINCGENKDNGDQRVIHLLLPSRGLTGFISPYLTNLTGLSQLNLSHNRLSGTLPTQFLSLLNHLQILDLSYNHLSGELPTFVANNGTTSIIQELDLSSNIFHGALPSSVLQYLTAAAMGGTLTSFNVSNNSFTGQIPTSQLCISESASSLSSLRFLDVSSNDFNGSIQPGLGACFKLEIFRAGFNFLSGPLPGDIFDALSLRAVSLPLNKLSGNIGNEIVSLTNLTVLELYSNDFRGPIPRDIGKLSKLEKLLLHINNLTGTLPPSLMNCVNLVNLNLRVNSLEGNLSAFNFSGFLQLTTLDLGNNNFTGNLPTTLYACKSLAAVRLAFNHLEGQITPDILGLESLSFLSISTNYLRNFTGAMRILTGLKNLSTLALSKNFYNEMMPNDENLIGPDDFQKLQVLGLGGCNFTGQIPGWLAKLKKLEVLDLSYNLITGSIPPWLGTLPQLFYIDLSYNLITGIFPTELRRISALTSQEANDKIERTYLELPVFIDSNNATQQQYNQLANLPPAIYLRNNSLGGSIPVEIGLLKVLHQLDLSNNNFSGSIPVQISNLTNLERLDLSGNRLSGEIPDSLKSLHFLSFFSVASNDLQGQIPTGGQFDTFPPSSFEGNQQLCGSAVQRSCPNQQGGVATRRRSKNKIMIGLVIAVCFGTVSITTVLTLWILSKRRINPGGDPDKIELESISANSNSGIHPEVDKETSLVVLFPNNKNEFKDLTISEILKATENFSHANIIGCGGFGLVYKATLPNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVSLQGYCVHDGFRLLIYTYMENGSLDYWLHEKADGASQLDWPTRLKIAQGAGCGLAYMHQICEPHIVHRDIKSSNILLNEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDICRPRMSRELVGWVQQMRSEGKQDQVFDPLLRGKGFEEEMLQVLDVACMCVNLNPFKRPSIREVVDWLKNVGSANQNQNKD 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0543 1159 SUPERFAMILY L domain-like 293 621 - -
Glsi06g0543 1159 PANTHER LEUCINE RICH REPEAT KINASE 2 443 1150 - -
Glsi06g0543 1159 Gene3D Transferase(Phosphotransferase) domain 1 951 1159 - -
Glsi06g0543 1159 SUPERFAMILY L domain-like 514 852 - -
Glsi06g0543 1159 SMART LRR_typ_2 207 231 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 677 700 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 701 725 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 392 416 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 441 465 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 296 320 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 568 592 IPR003591 -
Glsi06g0543 1159 SMART LRR_typ_2 182 206 IPR003591 -
Glsi06g0543 1159 Pfam Leucine Rich Repeat 703 725 IPR001611 GO:0005515
Glsi06g0543 1159 ProSiteProfiles Protein kinase domain profile. 875 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0543 1159 Gene3D Phosphorylase Kinase; domain 1 838 950 - -
Glsi06g0543 1159 MobiDBLite consensus disorder prediction 1 37 - -
Glsi06g0543 1159 FunFam Leucine-rich repeat receptor-like protein kinase 951 1157 - -
Glsi06g0543 1159 Gene3D Ribonuclease Inhibitor 342 436 IPR032675 -
Glsi06g0543 1159 Pfam Leucine Rich repeat 208 223 IPR001611 GO:0005515
Glsi06g0543 1159 CDD STKc_IRAK 881 1148 - -
Glsi06g0543 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Glsi06g0543 1159 SUPERFAMILY L domain-like 109 358 - -
Glsi06g0543 1159 MobiDBLite consensus disorder prediction 1 38 - -
Glsi06g0543 1159 Pfam Leucine rich repeat N-terminal domain 114 150 IPR013210 -
Glsi06g0543 1159 Gene3D Ribonuclease Inhibitor 288 341 IPR032675 -
Glsi06g0543 1159 Gene3D Ribonuclease Inhibitor 113 234 IPR032675 -
Glsi06g0543 1159 Gene3D Ribonuclease Inhibitor 235 287 IPR032675 -
Glsi06g0543 1159 Pfam Protein kinase domain 877 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0543 1159 FunFam Leucine-rich repeat receptor-like kinase 117 236 - -
Glsi06g0543 1159 ProSiteProfiles Leucine-rich repeat profile. 570 593 IPR001611 GO:0005515
Glsi06g0543 1159 SUPERFAMILY Protein kinase-like (PK-like) 860 1146 IPR011009 -
Glsi06g0543 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 338 433 - -
Glsi06g0543 1159 PRINTS Leucine-rich repeat signature 701 714 - -
Glsi06g0543 1159 PRINTS Leucine-rich repeat signature 185 198 - -
Glsi06g0543 1159 ProSitePatterns Protein kinases ATP-binding region signature. 881 904 IPR017441 GO:0005524
Glsi06g0543 1159 FunFam Tyrosine-sulfated glycopeptide receptor 1 438 776 - -
Glsi06g0543 1159 FunFam Leucine-rich repeat receptor protein kinase MSP1 839 950 - -
Glsi06g0543 1159 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Glsi06g0543 1159 ProSiteProfiles Leucine-rich repeat profile. 703 725 IPR001611 GO:0005515
Glsi06g0543 1159 Gene3D Ribonuclease Inhibitor 437 777 IPR032675 -
Glsi06g0543 1159 SMART serkin_6 875 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0543 Glsi-ChrGlsi06 5025408 5028887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0543 71 771 Miscellaneous Gene Families AT1G17250 53.672 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi06g0543 Pkinase 2.2e-38 CL0016