Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0540 ATGCTGGAGGATCGGGGTTTGTTGCTAGTGTTCATCAGCACCTGCATTCTGGGTTGGATGCCCATTGCCATCAATGGTGGCACAGATCCAACTGATGCTGCTGCTTTAAAAGCTATGTTTAGCGGTATGAATTCACCATCCCAGCTAGGCTGGCCAGCAAATGGTGATGACCCCTGTGGACAGTCTTGGAAAGGCATTACTTGCTCAGACAGCCGAGTCACAGAGATTAAGTTACCTAATCTTGGATTATCTGGATCATTGGGTTACCAGTTACAAACCATGACATCTGTGACCAACCTAGACATGAGTAGCAACAATTTTGAAGGTGGTATACCATACCAACTTCCTCCAAATTTGCAGCAATTAAATCTTGCCAATAATAGGTTCACTGGGAATATTCCGTATTCTATTGCTGAGATGACTTCTCTAACATACCTAAATCTTGGTCACAATCAGCTACAGAATGGACTGGATAACATATTTCAGAAGCTTTCTTCCCTGTCCACATTGGATCTCTCTTTCAATTCTCTGTCTGGCAACCTCCCTCAAAGTTTCAGCTCACTTTCAAGCATGACCAACATGAATCTGCAAAACAACCAGTTTACAGGCACCATTGATGTCCTTGCCAATCTGCCTCTTGAAAATCTGAATGTGGAAAACAACCATTTTACAGGCTGGATACCAGAACAGTTGAAAAACATAAACTTACAGAAGGAAGGTAATACATGGAGCACAGGCCCTGCACCCCCTCCACCCCCTGGGACGCCTCCTGCAAGTAGAAGCAACCGGAATCACAAATCTGGTGGAAGTAACTCCCCTTCAGATGCTGGGACCAGTGAAGGGGGTAAAAAATCTGGTATAGGAGGTGGTGGTATTGCTGGAATAGTTATCTCCATCATTGTTGTTGGTGCATTAGTAGCTTTCTTTTTGGTGAAAAGAAAATCCAGGAAGTCATCTTCTGATATAGAGAAGCTTGACAATCAGCCTTTTGCTCCCCTGACTTCAAATGAAGTGCATGAAGTGAAGTCTGTGCAAACACCCTCTGTAGTTGACATGAAGACATTTGATTCTTCTGCCTCAATAAATCTTAAACCCCCACCTATTGATCGTCACAAGTCATTTGATGAAGATGAATTTTCAAAGAAGCCCATTGCTGTCAAGAAAACTGTAAAAGCTCCTGCAAATGTGAAATCATATTCTATTGCAGACCTACAGATTGCCACTGGGAGCTTCAGTGTGGATCACCTCCTTGGAGAGGGATCTTTTGGACGTGTTTACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCGTCTGTCCTTCCCTATGATTTGTCTGAAGAATTTACAGGAATAGTTTCAAACATATCCCATTTGCATCATCCAAATGTAACAGAGCTTGTTGGTTATTGTTCCGAGCATGGACAACACCTCCTAATCTATGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACTTACCTGATGACTATAGCAAACCATTAATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTACATGAAGTTTGTTCACCATCAGTTGTTCATAAGAATATTAAGTCAGCCAACATACTACTTGATGCGGAGCTTAATCCTCATCTTTCTGACTCTGGATTGGCAGGCTATATTCCAAATGCAGACCAGTTCTTGAACCATAATGCTGGATCTGGATATGATGCACCTGAGGTTGCCTTGTCTGGTCAGTATACTCTGAAGAGTGATGTCTACAGCTTTGGAGTTGTTATGTTGGAGCTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCGAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCTTTGGAGGGGCTATACCCTGTCAAGTCTCTTTCTAGGTTTGCTGACGTTGTTGCTCTTTGCGTTCAGCCGGAGCCTGAATTCCGACCGCCTATGTCAGAAGTGGTTCAAGCATTGGTTCGATTAGTGCAGCGAGCTAACATGAGCAAGCGGACAATTGGAATTGATCAAGGAGGATCCCAACGAGGAGGTGACGACCTAGACACACAAGATATGTAA 2151 0.4342 MLEDRGLLLVFISTCILGWMPIAINGGTDPTDAAALKAMFSGMNSPSQLGWPANGDDPCGQSWKGITCSDSRVTEIKLPNLGLSGSLGYQLQTMTSVTNLDMSSNNFEGGIPYQLPPNLQQLNLANNRFTGNIPYSIAEMTSLTYLNLGHNQLQNGLDNIFQKLSSLSTLDLSFNSLSGNLPQSFSSLSSMTNMNLQNNQFTGTIDVLANLPLENLNVENNHFTGWIPEQLKNINLQKEGNTWSTGPAPPPPPGTPPASRSNRNHKSGGSNSPSDAGTSEGGKKSGIGGGGIAGIVISIIVVGALVAFFLVKRKSRKSSSDIEKLDNQPFAPLTSNEVHEVKSVQTPSVVDMKTFDSSASINLKPPPIDRHKSFDEDEFSKKPIAVKKTVKAPANVKSYSIADLQIATGSFSVDHLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPYDLSEEFTGIVSNISHLHHPNVTELVGYCSEHGQHLLIYEFHKNGSLHDFLHLPDDYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDAELNPHLSDSGLAGYIPNADQFLNHNAGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTIGIDQGGSQRGGDDLDTQDM 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0540 716 Pfam Protein tyrosine and serine/threonine kinase 413 683 IPR001245 GO:0004672|GO:0006468
Glsi06g0540 716 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 489 697 - -
Glsi06g0540 716 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 254 - -
Glsi06g0540 716 MobiDBLite consensus disorder prediction 259 279 - -
Glsi06g0540 716 SUPERFAMILY L domain-like 28 233 - -
Glsi06g0540 716 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 687 IPR046959 -
Glsi06g0540 716 CDD STKc_IRAK 417 686 - -
Glsi06g0540 716 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Glsi06g0540 716 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Glsi06g0540 716 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 375 488 - -
Glsi06g0540 716 Gene3D Ribonuclease Inhibitor 29 250 IPR032675 -
Glsi06g0540 716 SMART LRR_typ_2 140 163 IPR003591 -
Glsi06g0540 716 SMART LRR_typ_2 164 187 IPR003591 -
Glsi06g0540 716 MobiDBLite consensus disorder prediction 239 284 - -
Glsi06g0540 716 Gene3D Phosphorylase Kinase; domain 1 373 488 - -
Glsi06g0540 716 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Glsi06g0540 716 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515
Glsi06g0540 716 MobiDBLite consensus disorder prediction 697 716 - -
Glsi06g0540 716 Gene3D Transferase(Phosphotransferase) domain 1 490 702 - -
Glsi06g0540 716 SUPERFAMILY Protein kinase-like (PK-like) 393 683 IPR011009 -
Glsi06g0540 716 ProSiteProfiles Protein kinase domain profile. 411 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0540 Glsi-ChrGlsi06 4993752 5001721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0540 1 715 Strubbelig Receptor Gene Family AT1G53730 67.541 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Glsi06g0540 PK_Tyr_Ser-Thr 1.1e-39 CL0016