Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0535 ATGGGTGACTCATTAGGGTCAAGTGACAGATTGAGCGAGTCTCCTGCTGTTGAAATGACCGGCAAGATCATGGTGGTAGCTATAATTATCCTCTTCTTGGTGGTTGTGTTTGTTCTCTTCCTCCATCTCTATGCCAAATGGTTCTGGTGGCACATTGAAGAAAGCACTTCTCCCCAGCCTCGTCGCCGTCGCCGCCGCCGCTTTGTCTTTGCCCCAGGTCAGGATCCGGCTATTTACGGCACTCACCGAAGTGGGCTCGACCCTGCAGTGCTTAGGTCCTTACCAGTATTAGTTTACCAACCTGAAGACTTCAAAGATGGTCTGGAATGTGCAGTTTGCCTCTCTGAGCTTGTTCAAGGGGAAAAGGCAAGGCTTTTACCCAAATGCAATCATGGTTTTCACGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACTTGTCCACTTTGTAGGAACCCAATTGCTTCTGAATCCCCTAAATTCAATAGCAACTCCAATGCACAAGAAAATGCCTCTGAGAATAATAGTCAGTCACCAGGAGCAGAAAACTCAGCTACCATGAGTGGCTCAGAGTCTCCAAGTTTCCCAACTAATGTGTTAATTTGGGGGAACCAGACCCAAGTCATTTCCATTGGTGCTTCTTTGGAAGAAGAAGGCCCTTCTCCTCAACAACAACCTTGCCCTTTATCGTCTACTTCATCTTCTTCTACATCGGGGAGTAGTAGTAGTAGCAATAGACGCCATGAAATGCTGGTGATTGATATACCAAGTGAGATCAATTCGTCATCATTATCACCTTCTGCAAGCAGGTTTGCTGAAGATGAGCTGAAATCGCCAATGACAACGAGACTGAGGTCATTAAAGAGGCTTTTAAGCAGGGACAAAAGGTTAAATCCTTGCAGTCCTAGCTCTATAGATGTAGAACAAGCAGGGAGAGGACAGAACTAG 951 0.4595 MGDSLGSSDRLSESPAVEMTGKIMVVAIIILFLVVVFVLFLHLYAKWFWWHIEESTSPQPRRRRRRRFVFAPGQDPAIYGTHRSGLDPAVLRSLPVLVYQPEDFKDGLECAVCLSELVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPIASESPKFNSNSNAQENASENNSQSPGAENSATMSGSESPSFPTNVLIWGNQTQVISIGASLEEEGPSPQQQPCPLSSTSSSSTSGSSSSSNRRHEMLVIDIPSEINSSSLSPSASRFAEDELKSPMTTRLRSLKRLLSRDKRLNPCSPSSIDVEQAGRGQN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0535 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Glsi06g0535 316 MobiDBLite consensus disorder prediction 298 316 - -
Glsi06g0535 316 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Glsi06g0535 316 FunFam RING-H2 finger protein ATL3 78 157 - -
Glsi06g0535 316 CDD RING-H2_EL5-like 109 152 - -
Glsi06g0535 316 SUPERFAMILY RING/U-box 90 158 - -
Glsi06g0535 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 278 - -
Glsi06g0535 316 MobiDBLite consensus disorder prediction 277 296 - -
Glsi06g0535 316 SMART ring_2 110 151 IPR001841 -
Glsi06g0535 316 Pfam Ring finger domain 109 152 IPR001841 -
Glsi06g0535 316 MobiDBLite consensus disorder prediction 217 249 - -
Glsi06g0535 316 MobiDBLite consensus disorder prediction 217 316 - -
Glsi06g0535 316 MobiDBLite consensus disorder prediction 161 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0535 Glsi-ChrGlsi06 4968715 4969665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0535 3 299 C3H Transcription Factor Family AT1G53820 43.671 2.05e-74 229