Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0532 ATGCAAAGCAGTAAGAACCTGACCAAGAGAGGGAAAACTGCTCTGCATGATTGCTTGGAGACCATTGATTTGTCTCTGGACGGGCTTCACAGGGTCGTGGGTGAACTGGAAGAGTACCCGAAGAACAAGTCTATGTCAGAGTACTCCGATGACCTTAAGACTCTGTTAAGTGCTACCATTACCTACCAAGAGACTTGCTTGGATGGGTTCTCCCACGGCGAGGAGGATAGGCACGTCAGGGAAGGTCTAAGAGATGGGCATGTGCATGTGGAGCATATGAGCAGTAACGCATTGGCTATGGTCAAGAATATGACTGATACTGACATTGGAAATTATGAGAAGAAGATCGGAAGTAGCAACAGGAAGATGATGGAGACGCAGGGGGGTGGGATTAAGTGGCCGAAGTGGATGTCGACGGCAGACAGAAGGCTTCTGCAATCGACAACGGTGATTCCGAACGTGGTGGTGGCGGCGGACGGGACGGGAAACTTCAGGACGGTGTCAGCAGCGGTGGCTGCTGCTCCTGAGCAGAGTAGCAATAGATATATAATCAAGATCAATGCAGGAACGTACAGTGAGAATGTGGCGGTACCAAAGACGAAGACCAATATTATGTTCGTGGGTGATGGAGCAAGCATCACTATCATCACAGGAAGCAGAAATGTTGCTGATGGAAGCACTACCTTTGACTCTGCCACCGTGGCCGTAGTGGGGGAACGATTCTTGGCCCGAGGCATAACGTTCCAAAACACAGCAGGTCCCTCCAAGAACCAAGCCGTGGCTCTACGAGTAGGCGCCGACCTGTCCGCCTTCTACAACTGCGACATCCTAGCCTACCAAGACACCCTTTACGTCCACAGCAACCGCCAGTTCTTCGTTCAGTGCCTAATCGCCGGCACCGTCGACTTCATTTTCGGCAACTCCGCCGTCGTCTTCCAAAACTGCAATATCCGCCCTCGGCGCCCCAATCCGGGCCAAGAAAACACGATCACGGCCCAAGGGCGAACCGACCCGAACCAGAACACCGGGATCGTGATCCAGCAGTGTCAGATCGTGGCGAACACGGATCTGGCGCCGGTGGAGGCGAGCGTCCACACGTACCTTGGGAGGCCATGGAAGGAGTATTCTAGAACAGTGGTGATGGAGACGTATTTAGGGGATTTGATAGACCCGGCCGGGTGGTTAATGTGGAGTGGGAATTTTGCGTTGAACACATTGTATTATGGGGAGTATGAGAATACCGGACCCGGTGCTGATACTGCGGGGAGGGTAAATTGGCAGGGGTTTAGGGTTATTACTAGTGCTTCTGAGGCTCAGGGTTTCACTCCTGGGAGCTTCATTGCCGGTGCTAGTTGGTTGGGTTCTACTGGGTTTCCTTACTCTCTTGGCCTGTAA 1395 0.5269 MQSSKNLTKRGKTALHDCLETIDLSLDGLHRVVGELEEYPKNKSMSEYSDDLKTLLSATITYQETCLDGFSHGEEDRHVREGLRDGHVHVEHMSSNALAMVKNMTDTDIGNYEKKIGSSNRKMMETQGGGIKWPKWMSTADRRLLQSTTVIPNVVVAADGTGNFRTVSAAVAAAPEQSSNRYIIKINAGTYSENVAVPKTKTNIMFVGDGASITIITGSRNVADGSTTFDSATVAVVGERFLARGITFQNTAGPSKNQAVALRVGADLSAFYNCDILAYQDTLYVHSNRQFFVQCLIAGTVDFIFGNSAVVFQNCNIRPRRPNPGQENTITAQGRTDPNQNTGIVIQQCQIVANTDLAPVEASVHTYLGRPWKEYSRTVVMETYLGDLIDPAGWLMWSGNFALNTLYYGEYENTGPGADTAGRVNWQGFRVITSASEAQGFTPGSFIAGASWLGSTGFPYSLGL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0532 464 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 105 IPR035513 -
Glsi06g0532 464 CDD PMEI-like_3 1 105 - -
Glsi06g0532 464 PANTHER PECTINESTERASE 6 454 - -
Glsi06g0532 464 Pfam Plant invertase/pectin methylesterase inhibitor 7 100 IPR006501 GO:0004857
Glsi06g0532 464 FunFam Pectinesterase 147 464 - -
Glsi06g0532 464 Pfam Pectinesterase 153 449 IPR000070 GO:0030599|GO:0042545
Glsi06g0532 464 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 105 IPR035513 -
Glsi06g0532 464 Gene3D - 147 464 IPR012334 -
Glsi06g0532 464 ProSitePatterns Pectinesterase signature 2. 297 306 IPR033131 -
Glsi06g0532 464 SUPERFAMILY Pectin lyase-like 152 463 IPR011050 -
Glsi06g0532 464 FunFam Pectinesterase 1 105 - -
Glsi06g0532 464 NCBIfam pectinesterase inhibitor domain 4 104 IPR006501 GO:0004857
Glsi06g0532 464 SMART PMEI_2 2 100 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0532 Glsi-ChrGlsi06 4946284 4949408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0532 1 464 Carbohydrate Esterase AT3G14310 65.625 0.0 642