Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0531 ATGGACTCTATCAACTCCTTCAAGGGTTATGGTAAGGTTGATGAGCTCGAGCAGCTAGCTTTACGGAAGAAGACACGTAGGCGTCTGATCGTAATCATCGTCTCCTCCGTTGTATTATTAGTGGTGATCATCGCCGCAGTCTCAGGGACCGTGATACACAAGCGTAACAGCTCGTCTTCTGATAACTCGGTTCCTCCAACTCAGTTAACCCCGGCCGCCTCACTCAAAGCCGTCTGCGACGTGACTCAGTACCCCAACTCGTGCCTCTCCAGCATCTCCTCCCTCCCCAACTCTAACACCACCGACCCAGAACTCCTCTTCAAGCTCTCTCTTCGCGTCGCCATTGATGAGCTCTCGAAGCTCTCGAAGTACCCTTCCAAGCTCAAGGCCAATGCCAAGGATCCCCGGGAACAGAAGGCCATTGACGTCTGCGGAACTGTTCTTGATGATGCGGTGGATCGGCTCAACGAGTCGATTTCGTCACTGGAAGTTGGCGAAGGGGGCAAGCTCCTTTCGCCGGCGAAGATCAATGACATTGAGACTTGGCTCAGCGCAACGATTACTGACCAAGAAACCTGTTTGGACGCTCTTGAGGAGTTGAATTCCACAGCTGCTCATGAGCTTCTTCGGGATTTGAGAACCGCCATGAAGAACTCCACTGAGTTCGCGAGCAACAGCTTGGCCATCGTCACAAAGATTCTGGGTCTGCTCGCCAACTTCAACACCCCGATCCATCGGAGGCTACTCGAGTCGAACTCCGGGTTCCCGGATTGGGTTGGGCCGGCGGAGCAGAGACTGTTACAGGAAACCAAAAAAACGACGCCAGACGTGGTGGTGGCGAAGGACGGAAGCGGCCAATACAAAACGATTAATGAAGCAGTGGCGGCGGTGAAGAAGAAGAGTGATACTAGATTTGTGATTCATGTGAAGGAAGGTGTTTATGTGGAGAATGTAAATTTGGATAAAAATACATGGAATGTGATGATATTCGGAGATGGGAAAACCAAAACCATCATCTCCAGCGACCGGAACTTCATCGACGGCACTCCCACTTTTGAGACTGCCACTTTTGCTGTCAAGGGAAAGGGATTCATTGCCAAAGACATTGGATTCGTAAACACTGCAGGTGCATCGAAGCACCAAGCTGTGGCAATGAGATCTGGCTCAGATCTCTCTGTGTTCTACAGGTGCTCATTTGAAGGCTTCCAAGACACTCTCTATGCCCATTCCAACCGTCAGTTCTACCGTGACTGTGACATTACAGGCACCGTAGACTTCATCTTTGGGAATGCTGCTGCTGTGTTCCAAAACTGCAATATCAAACCCAGGCAGCCTCTGCCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCTAACCAGAACACTGGAATTATAATTCAAAAGTCTCCTATCTCTGCACTAGATAACCTTACTGCTCCCACGTACCTTGGTAGGCCTTGGAAAAACTACTCCACCACTGTGATTATGCAGTCTGATATTGGGTCATTCTTGAACCCAGTGGGCTGGATAGAATGGGCCCCCAATGTGGAGCCTCCAAGCACTATATTTTATGCAGAGTACCGTAATACTGGGCCAGGCTCAAACGTGACAGAGCGGGTTAAATGGGTTGGTTATAAGCCCAGTCTCACAGAAGATGAGGCGGGGAAGTTCACGGTACGTTCCTTTATCCAAGGGGATGAATGGTTGCCAGACACTGCTGTGGAGTTTCAGTCTACATTATAA 1752 0.5011 MDSINSFKGYGKVDELEQLALRKKTRRRLIVIIVSSVVLLVVIIAAVSGTVIHKRNSSSSDNSVPPTQLTPAASLKAVCDVTQYPNSCLSSISSLPNSNTTDPELLFKLSLRVAIDELSKLSKYPSKLKANAKDPREQKAIDVCGTVLDDAVDRLNESISSLEVGEGGKLLSPAKINDIETWLSATITDQETCLDALEELNSTAAHELLRDLRTAMKNSTEFASNSLAIVTKILGLLANFNTPIHRRLLESNSGFPDWVGPAEQRLLQETKKTTPDVVVAKDGSGQYKTINEAVAAVKKKSDTRFVIHVKEGVYVENVNLDKNTWNVMIFGDGKTKTIISSDRNFIDGTPTFETATFAVKGKGFIAKDIGFVNTAGASKHQAVAMRSGSDLSVFYRCSFEGFQDTLYAHSNRQFYRDCDITGTVDFIFGNAAAVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSPISALDNLTAPTYLGRPWKNYSTTVIMQSDIGSFLNPVGWIEWAPNVEPPSTIFYAEYRNTGPGSNVTERVKWVGYKPSLTEDEAGKFTVRSFIQGDEWLPDTAVEFQSTL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0531 583 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Glsi06g0531 583 FunFam Pectinesterase 270 583 - -
Glsi06g0531 583 SUPERFAMILY Pectin lyase-like 274 580 IPR011050 -
Glsi06g0531 583 CDD PMEI-like_3 77 233 - -
Glsi06g0531 583 NCBIfam pectinesterase inhibitor domain 63 233 IPR006501 GO:0004857
Glsi06g0531 583 PANTHER PECTINESTERASE 34 573 - -
Glsi06g0531 583 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Glsi06g0531 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 234 IPR035513 -
Glsi06g0531 583 Pfam Plant invertase/pectin methylesterase inhibitor 75 229 IPR006501 GO:0004857
Glsi06g0531 583 Gene3D - 270 583 IPR012334 -
Glsi06g0531 583 SMART PMEI_2 70 229 IPR006501 GO:0004857
Glsi06g0531 583 Pfam Pectinesterase 276 569 IPR000070 GO:0030599|GO:0042545
Glsi06g0531 583 FunFam Pectinesterase 71 234 - -
Glsi06g0531 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 234 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0531 Glsi-ChrGlsi06 4940141 4943419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0531 1 577 Carbohydrate Esterase AT1G53840 60.477 0.0 714