Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0524 ATGCAGGGAGCATCATCAGCTTCTTCTACTGATCATCTCTTCGTCGATGATTTCTACTTTTCAGCCCTTTACGATGACGAGGAGATATTTCCAATATCCGATGAGAAATATGCAGAACAGATTCAGCTACAAGAAGCCTTAATGTCTTCTGCTATGACGTTCATGAAAAGGGAGGCTATTATTGAAGTGAATGAACAAACCCACTCGAGAACTCTGACGGGGAAAGAGAAAGAGACTGCTCAATCTTCTAAAAGCAGCTTGAGGTTTAGCTTCTGTGGAATTTGCATGGAAGCTAAACCTTCTGAAGATATGTTCAGAAACCAAAACTACTGCACCCACTCCTTCTGTACAGATTGTATGGGAAGCTATGTGGGTGCAAAGATTCAGGAGAATATATCAATGGTGAAATGCCCCGACCCAGAATGCAGGTCTGTTCTGGAGCCTCAGTTTTGTCGTTCAATTATCCCAGAGGAGGTGGGAAAACGCTGGGAAAATGCCCTATGTGAGAACCTGATACTTTGTTCCCAAAAATTTTACTGTCCTTTCAAGGATTGCTCGGCTATGATGGTGGACGATGGAGACGAGGTTGTAACATCCTCGGAGTGTCCGAATTGCAGGAGGCTTTTCTGTGCACAGTGCGGGGTTTCATGGCATGCAGGGATGGAGTGTAGGGAGTTCCAGAGCTTGAAAGATGGTGAGAGAGAGAGGGGAGATCAAATGTTAATGGAACTGGCGAAGCATAAGAGCTGGAGAAGATGCCCTCATTGCAAATTTTATGTGGAAAAGGTTGCGGGATGCTCTCACATTTCTTGCAGGTGTGGTCATCAGTTTTGTTATGGATGCGGATCCAATTGGAGTCCAGAGCACGGATGCGACACCTCCAGCGACGAGGAATGA 897 0.456 MQGASSASSTDHLFVDDFYFSALYDDEEIFPISDEKYAEQIQLQEALMSSAMTFMKREAIIEVNEQTHSRTLTGKEKETAQSSKSSLRFSFCGICMEAKPSEDMFRNQNYCTHSFCTDCMGSYVGAKIQENISMVKCPDPECRSVLEPQFCRSIIPEEVGKRWENALCENLILCSQKFYCPFKDCSAMMVDDGDEVVTSSECPNCRRLFCAQCGVSWHAGMECREFQSLKDGERERGDQMLMELAKHKSWRRCPHCKFYVEKVAGCSHISCRCGHQFCYGCGSNWSPEHGCDTSSDEE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0524 298 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Glsi06g0524 298 SUPERFAMILY RING/U-box 167 227 - -
Glsi06g0524 298 Gene3D - 220 298 - -
Glsi06g0524 298 ProSiteProfiles Zinc finger RING-type profile. 92 138 IPR001841 -
Glsi06g0524 298 SMART ibrneu5 235 291 IPR002867 GO:0008270
Glsi06g0524 298 SMART ibrneu5 161 223 IPR002867 GO:0008270
Glsi06g0524 298 CDD BRcat_RBR_unk 175 226 - -
Glsi06g0524 298 FunFam RBR-type E3 ubiquitin transferase 88 174 - -
Glsi06g0524 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 174 IPR013083 -
Glsi06g0524 298 ProSiteProfiles TRIAD supradomain profile. 88 298 IPR044066 -
Glsi06g0524 298 Pfam IBR domain, a half RING-finger domain 162 223 IPR002867 GO:0008270
Glsi06g0524 298 Pfam IBR domain, a half RING-finger domain 244 291 IPR002867 GO:0008270
Glsi06g0524 298 SUPERFAMILY RING/U-box 234 291 - -
Glsi06g0524 298 CDD Rcat_RBR_unk 250 285 - -
Glsi06g0524 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 284 IPR031127 GO:0004842|GO:0016567
Glsi06g0524 298 SUPERFAMILY RING/U-box 89 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0524 Glsi-ChrGlsi06 4882052 4883092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0524 36 283 C3H Transcription Factor Family AT2G19610 25.475 8.13e-20 87.0