Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0520 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCAGCCGCGGCGGGGAGATCTCGCCGGCTGACCGCAGACTTTCTCTGGCCCGATTTGAAGAAACCCAGTTCGGGGAGGAGATTATCGAAGTCCCTGAGGCGTGAGGTCCCAGTCGACGTGGATGATGATTTTGAAGCTGATTTTCAAGAATTCAAGGACGATTCTGATATCGATGAGGATGAAGATGATGATTTGCTGGTAGATGTCAAGCCTTTTGCTTTCTCCGCCAGCAAGCCTTCTAACCCCCGGTCTCGCGGATCTGCAACTGTAAAATCTGAGGAATTCAATGGGCAAGCCGAGAAGTCTGCAAAGAGAAGAAGGAAGAATCAATATAGGGGAATCCGTCAGCGCCCATGGGGTAAATGGGCAGCTGAGATCCGGGACCCAAGAAAGGGTGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGAGGTCTCAGGTACTTCCCCAAAACGTCTGAAGCCAAATGCTGAGAAACAGCTTCCAAAGGCAAACCTGAACTCTGCCCTGCCCAATGAGAACCAGAATTTCAATGTTGGTTGTAATCTGGAGGATTACTATTGTCCTTTAGGTCTTGTGGAAGAGAAACCACAGGTTAACCAGTTTGCTGCTAACATGGGCTCCTTCCCCGGCAGTGGAGATGTGCTTCCATCACTCTCACCATCTGACGATGTTACCTTTTATTTCAGTTCAGATCAGGCTAGCAATTCATTTGAACATTCAGATCTTGGATGGGGTGAACAGTGCCCAAAAACTCCGGAAATCTCTTCCATGTTTTCTGCTTCTGAGGAAGATGAATCCAAGTATCTGCAAGATGCCAACCAGGAACAAAACATACATTCAAACTCTCAGAATGTAGTATCCATGGAAGATGATTCTGCAAAGACACTATCTGACGAGCTTGCTGATATTGAATCCCAGCTGAACTACAAGTTTGAGGAATGGTTGTCACCTGCGTTGGAGGTGGAGTTAAGAAACAAGTGTAACCCGCTTAAGCATGTGTGGAGGTTATTCTCTAGTAGCTAA 1143 0.4768 MCGGAIISDFIPAAAAAAGRSRRLTADFLWPDLKKPSSGRRLSKSLRREVPVDVDDDFEADFQEFKDDSDIDEDEDDDLLVDVKPFAFSASKPSNPRSRGSATVKSEEFNGQAEKSAKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVSGTSPKRLKPNAEKQLPKANLNSALPNENQNFNVGCNLEDYYCPLGLVEEKPQVNQFAANMGSFPGSGDVLPSLSPSDDVTFYFSSDQASNSFEHSDLGWGEQCPKTPEISSMFSASEEDESKYLQDANQEQNIHSNSQNVVSMEDDSAKTLSDELADIESQLNYKFEEWLSPALEVELRNKCNPLKHVWRLFSSS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0520 380 PANTHER DNA-BINDING DOMAIN 98 341 IPR044808 GO:0003700|GO:0009873
Glsi06g0520 380 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Glsi06g0520 380 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Glsi06g0520 380 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Glsi06g0520 380 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Glsi06g0520 380 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Glsi06g0520 380 MobiDBLite consensus disorder prediction 91 110 - -
Glsi06g0520 380 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Glsi06g0520 380 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Glsi06g0520 380 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Glsi06g0520 380 MobiDBLite consensus disorder prediction 90 126 - -
Glsi06g0520 380 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0520 Glsi-ChrGlsi06 4852362 4854863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0520 1 322 AP2-EREBP Transcription Factor Family AT3G14230 50.737 8.36e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g0520 AP2 1.9e-12 CL0081