Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0508 ATGGCCACGACCACCACAGTCGCCGTGCCACCGCAACGACGTCTTATTATCAGTATTTACATTATTAATCTCGGAAAAACAGGGGAGAAGCTCCAGATTGCTGCTAGGGTGATTGTTGCCATCGAGAACCCTCAGGATATTATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAGTACACTGGCGCCCATGCAATTGCAGGAAGGCACACTCCAGGAACTTTTACTAATCAGCTCCAGACCTCCTATAAGGAGCCTCGCCTTCTCATTCTTACTGATCCTAGAACGGATCATCAGCCTATTAAGGAAGCTGCCCTGGGAAATATACCAACTATTGCATTCTGTGACACTGAGTCTCCTATGCTATATGTTGACATTGGGATTCCTGCCAATAATAAGGGAAAGCATAGCATCGGTTGTCTCTTTTGGCTTCTAGCAAGGATGGTTCTGCAGATGCGGGGCACCATTCGTCCTGGTCTAAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGACTAAGCAACAAGATGAAGAAGAAGCACCTCCAGCCCAAGATTACGCCATTGCAGACTTTAATACAGCTGCTATTGGTGGCCTTCCTGCTGATGGCCAGTGGCCTACTGCAATTGATCAACCATGGACTGATGCAGCTCCACAACCAATTCCAGCAGTTCCTGGTGTCAACTGGACCCCAGAAGCTGTTGGAGATTGGGGTGAATCTGTTCCAGCTCCACAAATAGCTGCGCCACGAATACCTGCTCCAGGGATTGAATCTGTTACTGCTTCTGGCAAGGACTAA 831 0.4777 MATTTTVAVPPQRRLIISIYIINLGKTGEKLQIAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYKEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTESPMLYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQDEEEAPPAQDYAIADFNTAAIGGLPADGQWPTAIDQPWTDAAPQPIPAVPGVNWTPEAVGDWGESVPAPQIAAPRIPAPGIESVTASGKD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0508 276 MobiDBLite consensus disorder prediction 250 276 - -
Glsi06g0508 276 CDD RPS2 19 157 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 ProSitePatterns Ribosomal protein S2 signature 2. 92 116 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 Pfam Ribosomal protein S2 88 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 NCBIfam 30S ribosomal protein S2 18 179 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi06g0508 276 SUPERFAMILY Ribosomal protein S2 19 173 IPR023591 -
Glsi06g0508 276 Gene3D - 12 192 - -
Glsi06g0508 276 PRINTS Ribosomal protein S2 signature 130 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 PRINTS Ribosomal protein S2 signature 18 27 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 PRINTS Ribosomal protein S2 signature 67 84 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 PRINTS Ribosomal protein S2 signature 109 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 PRINTS Ribosomal protein S2 signature 92 109 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi06g0508 276 FunFam 40S ribosomal protein SA 11 193 - -
Glsi06g0508 276 PANTHER 40S RIBOSOMAL PROTEIN SA 18 256 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0508 Glsi-ChrGlsi06 4533388 4540134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0508 13 254 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.721 5.66e-119 340