Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0489 ATGAGATTGATTAATTTAAAAAGAAGCAAACAGATGGAATACTCTTTTGTCTCCGCGTTTGATGATAAGGCTCCTCCTGTCCTGGACACCACTGTGGATGATCCCCTCTGGTTTTTGGAGGCCTCACCCTCATCTTTCTTATTTTCTCGAGGGTTAGACGCGGGACCCCTTAACCCTAATCGAGCACCGACTTCGCCTGAAAATCGCCCAGAAAAAATGCAGAATCAAAGGCTGAAGCAGCAACAACAAGCTTTGATGCAGCAAGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGCCTCTTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACGCAGGTAACTGAGCCACTTCTGCAAGAAGTTTTTGCAAGTACTGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGTTTCATTCACTACTTTGATCGAAGATCTGCAGCTCTTGCCATACTATCTCTCAATGGAAGACATCTTTTTGGGCAGCCTATCAAAGTTAATTGGGCATACGCAAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTCGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCGGTTTACTCCAGTTGTTCAGATGCAAGAGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCAATAAATGATTTGACTGGTAAGTGGCTCGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAGCTCAGATGCCAAAAGTGTGGTTGAACTAACAAATGGTTCTGAAGATGGTAAAGAGGCAACTAATAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGTAACCCAGCTCGATCTCCATCGCCACTTTCATGCTCTTGGGGCTGGAATGATAGAGGAGGTCCGTGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATAGTACACATGCTGAAGCAGCTCTGGCTATTCAAATGGGGAATGCCCAGTCTATTCTCTGTGGCAAACCAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCAGCTGCACCCCTGCCAGGCCTCTCAGCAACTGATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTACATGCCCTGATGCATCCCCAAGGACAGCATCCTCTTAAACAAGCAGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAACGTTGCTGCTGCACAACAAATGATGTACTACCAGTAA 1467 0.4649 MRLINLKRSKQMEYSFVSAFDDKAPPVLDTTVDDPLWFLEASPSSFLFSRGLDAGPLNPNRAPTSPENRPEKMQNQRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQSSDAKSVVELTNGSEDGKEATNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGMIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0489 488 FunFam oligouridylate-binding protein 1-like isoform X2 208 303 - -
Glsi06g0489 488 MobiDBLite consensus disorder prediction 50 74 - -
Glsi06g0489 488 SMART rrm1_1 211 284 IPR000504 GO:0003723
Glsi06g0489 488 SMART rrm1_1 331 401 IPR000504 GO:0003723
Glsi06g0489 488 SMART rrm1_1 126 195 IPR000504 GO:0003723
Glsi06g0489 488 Gene3D - 208 309 IPR012677 -
Glsi06g0489 488 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 114 408 - -
Glsi06g0489 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Glsi06g0489 488 SUPERFAMILY RNA-binding domain, RBD 204 291 IPR035979 GO:0003676
Glsi06g0489 488 CDD RRM2_PUB1 209 288 - -
Glsi06g0489 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 405 IPR000504 GO:0003723
Glsi06g0489 488 CDD RRM1_PUB1 127 197 - -
Glsi06g0489 488 FunFam Oligouridylate-binding protein 1C 308 409 - -
Glsi06g0489 488 FunFam oligouridylate-binding protein 1B-like isoform X2 73 207 - -
Glsi06g0489 488 MobiDBLite consensus disorder prediction 288 329 - -
Glsi06g0489 488 Gene3D - 310 409 IPR012677 -
Glsi06g0489 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 395 IPR000504 GO:0003723
Glsi06g0489 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
Glsi06g0489 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 193 IPR000504 GO:0003723
Glsi06g0489 488 SUPERFAMILY RNA-binding domain, RBD 109 203 IPR035979 GO:0003676
Glsi06g0489 488 SUPERFAMILY RNA-binding domain, RBD 321 412 IPR035979 GO:0003676
Glsi06g0489 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 199 IPR000504 GO:0003723
Glsi06g0489 488 Gene3D - 66 207 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0489 Glsi-ChrGlsi06 4401486 4412604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0489 120 405 Eukaryotic Initiation Factors Gene Family AT1G49760 30.164 7.10e-26 109