Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0488 ATGTCGAATTTCCCCGACAAGGTGGCGGCAGCTGATAGCCGGGGGTCCGGCAGGGCGCCGGATAGGTCCAATTTCACTCAGGCTTGCAATCTCTTGAGCCAGTTCTTGAAGGAGAAGCGCGGGTCTGGAGCCTTAAGCCTTGGAACGGCTGGAAAAATGGAACCCAAAGCAACTACGAAGGACTTGTTGACAAACCAGCAAAATTCTGTTGATACATTGAGAAAAAATGCTTCAGCTATGGAATTTCTTCCACAGTTTGTGGAAAACCCCTGCATCAAGCGGTCAGATAACAGGTCAGGCACAGAGCCTGAAGCTCCGCAGATGACAATATTCTACGACGGAAAAGTGTTAGTGTTTGATTCTTTTGCACCGGAGAAGGCCACGGAGATCATGGAGCTGGCCACCAAGTTGAGTTCTGATGGTACTTCTGGCATCACCAAAAATCCCCCCAGTGCTTCAGCTGCTGCTAAAGAAAATTTGGATGTGGCCAAAGTGCCTGAAAACAAAACTGCCCAAGAAGGCCCTAGATCAGGATCCCAAGCTATTGGTTCAGATATGAGATATCCAAGGAGGGCTTCACTTCTAAAATTCCTTGAGAAGAGGAAAGAAAGGGTCATTGCTAAAGGACCTTACCAGCTGAACAACCCAAAGCATTATGAAGGAAGCAGTTCAGGAGGTGACCCTGAAGATCAGTCTTCTAAGTACTTTGACCTTAACTCATAG 723 0.4758 MSNFPDKVAAADSRGSGRAPDRSNFTQACNLLSQFLKEKRGSGALSLGTAGKMEPKATTKDLLTNQQNSVDTLRKNASAMEFLPQFVENPCIKRSDNRSGTEPEAPQMTIFYDGKVLVFDSFAPEKATEIMELATKLSSDGTSGITKNPPSASAAAKENLDVAKVPENKTAQEGPRSGSQAIGSDMRYPRRASLLKFLEKRKERVIAKGPYQLNNPKHYEGSSSGGDPEDQSSKYFDLNS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0488 240 Pfam Jas motif 190 212 IPR018467 -
Glsi06g0488 240 ProSiteProfiles Tify domain profile. 101 136 IPR010399 -
Glsi06g0488 240 Pfam tify domain 102 134 IPR010399 -
Glsi06g0488 240 SMART tify_2 101 136 IPR010399 -
Glsi06g0488 240 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 221 IPR040390 -
Glsi06g0488 240 MobiDBLite consensus disorder prediction 206 240 - -
Glsi06g0488 240 MobiDBLite consensus disorder prediction 216 240 - -
Glsi06g0488 240 MobiDBLite consensus disorder prediction 164 187 - -
Glsi06g0488 240 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0488 Glsi-ChrGlsi06 4399707 4401296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0488 14 216 Tify Gene Family AT1G19180 32.479 4.69e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Glsi06g0488 tify 8e-16 No_clan