Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0470 ATGCCTTCCAAAAGGCTTCGTTTGAAAACCTTCATACTTGGCTGTTTCAAGGCCAATAAACCATCCTTGAACCCAGCAGGCACCGTGGTTTCCAAAAAGACATCTTCAAGAAGAGTATCCCTCTCTGATTTAAGCAATTCTTCATCGCTCTCTATCATGAGTGATTTATCAAACTCTCTTCTTGGATCAAATCTCCATATCTTCACCTACAAGGAGCTCAAGGAGATCACACACAACTTCTGCAAAAGCAGTGTTCTTGGGGAAGGTGGGTTTGGGAAGGTATATAAAGGGTTCATTGATGACAAGCTTAGGCCTGGATTGAAACCTCAAGTTGTAGCAGTTAAGACGTTAGACTTGGATGGAAAACAAGGTCACAGAGAGTGGTTGGCTGAAGTTATCTTCCTGGGGCAGTTGAAACATCCCCATCTGGTGAACTTAATTGGCTACTGCTGTGAAGATGAACACAGGCTTCTTGTTTACGAGTACATGAAGAGGGGCAATCTAGAGGAAAAGCTTTTTAAGGGTTACTTCGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGGCTTGCTTTTCTTCACGAAGAAGAGCAACCAGTCATATATAGAGATGTTAAAGCCTCAAACATCCTATTAGACGCTGATTACAATGCCAAGCTCTCTGATTTCGGTCTGGCAATAGACGCTCCAGAAGAAGATCAAACACAAATTACAACTCGTGTGATGGGTACCCATGGCTATGCTGCTCCTGAGTATATCATGACAGGTATTTTGACAACCATGAGCGATGTGTATAGCTTTGGGGTAGTTCTCTTAGAGCTACTTACAGGAAGAAGGTCCATGGACAAGAACCGCCCAAGCAGAGAGCAGGATTTGGTAGAGTGGGCAAGGCCTCTATTGAAGGATTCTCATAAACTCGAAAGAATAATGGACCCAAGACTTGAGGGTCAATACTCTTATGAAGGGGCGAGAAAAATGGCTGCTTTGGCTCATCAATGTCTGAGCCATCAAGCAAAGTCTAGACCCTCAATGCGCAATGTGGTCAAGACCTTAGAACCTCTTATGGGATTGACTGATATTCCAGTTGGGTATTTTGTCTATGTCGCTCCTAAAGAAGGTGGAGAAGAAGCTCCTGTTCAGAGGAACGGGAAAGACACAGAATGTGAGGATGGTGATATTAGAAGTGGGAATAAAACTGAAGAAGAAAAGGGGGAGAAGAAGAAGAAGAAGATGGAGGGTCGTCACAGGCATCGAAAAAGTCATAGACATAGACGTCAGATTAAGCCAATGAGATTTCGCGCTGTTTACTCTGATACTGCTTTGTATAAAACTCTGGGTACCGAACTCTACTTTCCTAAGCATGCGCACAAGAAAATGACGGAGACGGGCATATATTAG 1416 0.4364 MPSKRLRLKTFILGCFKANKPSLNPAGTVVSKKTSSRRVSLSDLSNSSSLSIMSDLSNSLLGSNLHIFTYKELKEITHNFCKSSVLGEGGFGKVYKGFIDDKLRPGLKPQVVAVKTLDLDGKQGHREWLAEVIFLGQLKHPHLVNLIGYCCEDEHRLLVYEYMKRGNLEEKLFKGYFATLPWLTRIKIAIGAAKGLAFLHEEEQPVIYRDVKASNILLDADYNAKLSDFGLAIDAPEEDQTQITTRVMGTHGYAAPEYIMTGILTTMSDVYSFGVVLLELLTGRRSMDKNRPSREQDLVEWARPLLKDSHKLERIMDPRLEGQYSYEGARKMAALAHQCLSHQAKSRPSMRNVVKTLEPLMGLTDIPVGYFVYVAPKEGGEEAPVQRNGKDTECEDGDIRSGNKTEEEKGEKKKKKMEGRHRHRKSHRHRRQIKPMRFRAVYSDTALYKTLGTELYFPKHAHKKMTETGIY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0470 471 MobiDBLite consensus disorder prediction 415 431 - -
Glsi06g0470 471 MobiDBLite consensus disorder prediction 383 414 - -
Glsi06g0470 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Glsi06g0470 471 PANTHER OS01G0588500 PROTEIN-RELATED 45 360 - -
Glsi06g0470 471 MobiDBLite consensus disorder prediction 380 431 - -
Glsi06g0470 471 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 163 365 - -
Glsi06g0470 471 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
Glsi06g0470 471 SMART serkin_6 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0470 471 Gene3D Phosphorylase Kinase; domain 1 51 162 - -
Glsi06g0470 471 Gene3D Transferase(Phosphotransferase) domain 1 163 365 - -
Glsi06g0470 471 ProSitePatterns Protein kinases ATP-binding region signature. 86 115 IPR017441 GO:0005524
Glsi06g0470 471 CDD STKc_IRAK 86 360 - -
Glsi06g0470 471 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Glsi06g0470 471 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Glsi06g0470 471 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0470 Glsi-ChrGlsi06 4227945 4229771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0470 66 386 Glycoside Hydrolase AT3G07070 49.074 4.31e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi06g0470 PK_Tyr_Ser-Thr 7e-48 CL0016