LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0460	ATGATGAGTGCAAGAAATAGGTCCCCTTTCACAGCTACTCAGTGGCAAGAACTTGAACAACAAGCTCTTATTTTCAAATACATGGTCTCAGGGACCCCAGTCCCTCCTGATCTCATCTACTCTGTTAAAAGAAGTCTAGAGACTTCTATATCTTCAAGACTCTTCCCTCAGCATCCAATTGGATTGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATTTCCAGACTCTAAGTACTGTGAAAAACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACAGCAAGCACTACCACCGCAAACACCTCTCAAGCAATCTCATCATATAACAGAAGCCTTTCCATCAGCAATAACCCCAATACTCCCTCAAACTCTTCTTTCCCTTTCTCTCCAATGTTGTCATCATGTATGGCCTCTGAATCCCATCAGTCCTATTCCCATCCTTACCAAAATTCTTCTCTCAATCCCTTCTTTTACACCCACTCAACCTCTTCTAGACCTCCTGATTCTGATTTTTCATCTCAAAATAACACTACCCACCAACTATTTTTGGACTCTGGGTCTTATTCTCAGGATGAAAAAGATTATAGGCATATTCATGGAATGAGAGAGGATGTTGATGAGAGAGAGTTTTTCCCAGAAGCTTCAGGGACTGCTCGAAGCTATCCTGACTCATATCAACAATTATCTATGGGCTCCTACAAATCCTACTCAAACTCCCACTTTGAAAACATCAGTGATAGTCCTAGACAACAAGAGCAGCATTGTTTTGTTCTAGGCACTGACTTCAAATCACCAAGACCCAGCAAAAGTGATCAGAAAGAAACTGAGACTACCCAGAGGCCACTTCACCACTTTTTTGGGGAGTGGTCACCAAAGAACACAGATTCTTGGCTTGATCTTGCTTCCAATTCCAGAATCCCCACTGGTGATGATATATACGATCATCTTGTTTGCTTCCTATAA	1047	0.4241	MMSARNRSPFTATQWQELEQQALIFKYMVSGTPVPPDLIYSVKRSLETSISSRLFPQHPIGLGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGRNRSRKPVEVSSTASTTTANTSQAISSYNRSLSISNNPNTPSNSSFPFSPMLSSCMASESHQSYSHPYQNSSLNPFFYTHSTSSRPPDSDFSSQNNTTHQLFLDSGSYSQDEKDYRHIHGMREDVDEREFFPEASGTARSYPDSYQQLSMGSYKSYSNSHFENISDSPRQQEQHCFVLGTDFKSPRPSKSDQKETETTQRPLHHFFGEWSPKNTDSWLDLASNSRIPTGDDIYDHLVCFL	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0460	348	SMART	QLQ_2	8	44	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Glsi06g0460	348	MobiDBLite	consensus disorder prediction	115	132	-	-
	Glsi06g0460	348	MobiDBLite	consensus disorder prediction	186	205	-	-
	Glsi06g0460	348	MobiDBLite	consensus disorder prediction	287	310	-	-
	Glsi06g0460	348	MobiDBLite	consensus disorder prediction	101	132	-	-
	Glsi06g0460	348	MobiDBLite	consensus disorder prediction	294	309	-	-
	Glsi06g0460	348	Pfam	WRC	75	117	IPR014977	-
	Glsi06g0460	348	ProSiteProfiles	WRC domain profile.	74	118	IPR014977	-
	Glsi06g0460	348	Pfam	QLQ	9	41	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Glsi06g0460	348	ProSiteProfiles	QLQ domain profile.	9	44	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Glsi06g0460	348	PANTHER	GROWTH-REGULATING FACTOR 5	8	326	IPR031137	GO:0005634\|GO:0006351\|GO:0032502

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0460	Glsi-ChrGlsi06	3958125	3959410	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0460	7	318	GRF Transcription Factor Family	AT3G13960	40.331	4.12e-68	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRF	Glsi06g0460		WRC	1.1e-21	No_clan