Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0457 ATGGAGAGTGTGAGTGAACAGCGAGACGTGAAGCAAACAGAAGCCATGACAAACGTGAGTCTCAGTAAGGGAGCTTGGACACCTGAAGAAGATAGGAAACTGGCTCAAGTTATTGCCCTTCATGGTGCAAAAAGGTGGAAGTCCATTGCAGCCAAAGCAGGTCTTAATCGGTCTGGTAAGAGTTGTAGGCTAAGATGGTTGAACTATCTCAGACCCAATATCAAGAGGGGCAACATATCAGACCAAGAAGAAGATTTAATACTTCGCCTTCATAAACTCCTCGGAAACAGGTGGTCTTTGATTGCCGGAAGGCTACCTGGTCGAACAGATAATGAAATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATGAAAGAAAGGGAGAAGCAGAATATTGAGAGTTCAACAAGAGAAAGAAGCAGATCTCATATAAAAAGGGTGGTCGATCAAGAGACTGATGCAGAGCTGAGAGGAAAGAGTTCAACTACTCAAGGAATTAATGAAGACGACCCAAAATTCAAATTTGATGTTGATGATGACTTCTTTGATTTCTCTGAAGAAGGTCCATTGAATCAGGAGTGGCTTAGCAAATTCCTTCAGCTTGATTAG 612 0.4183 MESVSEQRDVKQTEAMTNVSLSKGAWTPEEDRKLAQVIALHGAKRWKSIAAKAGLNRSGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMKEREKQNIESSTRERSRSHIKRVVDQETDAELRGKSSTTQGINEDDPKFKFDVDDDFFDFSEEGPLNQEWLSKFLQLD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0457 203 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Glsi06g0457 203 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Glsi06g0457 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Glsi06g0457 203 FunFam Myb transcription factor 23 75 - -
Glsi06g0457 203 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Glsi06g0457 203 MobiDBLite consensus disorder prediction 127 157 - -
Glsi06g0457 203 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Glsi06g0457 203 MobiDBLite consensus disorder prediction 127 174 - -
Glsi06g0457 203 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Glsi06g0457 203 SMART sant 75 123 IPR001005 -
Glsi06g0457 203 SMART sant 22 72 IPR001005 -
Glsi06g0457 203 CDD SANT 80 121 IPR001005 -
Glsi06g0457 203 Gene3D - 79 152 - -
Glsi06g0457 203 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 160 - -
Glsi06g0457 203 Gene3D - 23 75 - -
Glsi06g0457 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Glsi06g0457 203 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0457 Glsi-ChrGlsi06 3936265 3937371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0457 1 139 MYB Transcription Factor Family AT3G13540 56.738 5.01e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g0457 Myb_DNA-binding 1.3e-19 CL0123