Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0449 ATGGAAGGAGATATCTTTGGAGACATAGTTAATACAACCCAGGTAGATAGCAGAATTTATCAGGCATTTCAAAAGAGTTTATTACAAGCCCAAGACATTTTGGATCAGAACAGGTTGCTAATCAATGAGATAAACCAAAATCATGAGTCGAAGATGCCTGATAACCTGAGTCGAAATGTGGGTTTGATCAGAGAGCTCAATAACAATATCAGAAGAGTGGTTGATCTCTATGCTGACCTTTCCAGTTCTTTTGTCAAGTCTCGCGAAGCTTCATCTGAAGGGGACTCCAGTGGCACTCTGAAGTCTGATGGAAAACACAGCCAGAAGAGAATTAGGGTTTCCGAGACGCAGATAACGGAGAGGAGTCCCAATTTTCTTCAGAGCTCACACAAACTCACCAACATGGCGACCCAATTGAGCAAAAAGCGAAAGTTTGTGGCAGATGGAGTTTTCTTTGCGGAGCTCAATGAGGTCTTGACCCGGGAGCTCGCAGAGGATGGGTATTCTGGGGTTGAAGTTAGGGTTACGCCCATGCGGACGGAGATCATCATAAGGGCGACTCGCACTCAGAACGTTCTTGGAGAGAAGGGGAGGAGAATAAGAGAACTGACATCTATTGTTCAGAAACGTTTTAAGTTTCCAGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTAGGAGGGCTTGCTGTTCGGCGGGCTTGCTATGGTGTCTTAAGGTTTGTTATGGAAAGCGGTGCAAAAGGTTGTGAGGTTATTGTTAGCGGCAAGCTTAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGATGGTTACATGATATCATCTGGTCAGCCTGTAAAAGAATATATTGATTCTGCCGTGAGGCATGTGCTTTTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGAAAGCAAGGCCCAACTAAACCACTGCCTGATATAGTGACCATCCATCAGCCAAAGGAGGAGGAGGATTACACCATCAGGCCCCAGTCAGCAGCAGGGCCAGTGCCAGTGTCAGTGCCAGTGCCAGTGCCCACCAACATAGAAATAGCGGCAGTTTAG 1146 0.4625 MEGDIFGDIVNTTQVDSRIYQAFQKSLLQAQDILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVDLYADLSSSFVKSREASSEGDSSGTLKSDGKHSQKRIRVSETQITERSPNFLQSSHKLTNMATQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDIVTIHQPKEEEDYTIRPQSAAGPVPVSVPVPVPTNIEIAAV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0449 381 Pfam Early Flowering 4 domain 14 95 IPR009741 -
Glsi06g0449 381 FunFam 40S ribosomal protein S3 227 361 - -
Glsi06g0449 381 Gene3D - 132 225 IPR015946 -
Glsi06g0449 381 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 140 332 - -
Glsi06g0449 381 Pfam Ribosomal protein S3, C-terminal domain 240 322 IPR001351 GO:0003735|GO:0006412
Glsi06g0449 381 MobiDBLite consensus disorder prediction 88 120 - -
Glsi06g0449 381 SUPERFAMILY Ribosomal protein S3 C-terminal domain 227 325 IPR036419 -
Glsi06g0449 381 Gene3D - 227 353 IPR036419 -
Glsi06g0449 381 MobiDBLite consensus disorder prediction 99 116 - -
Glsi06g0449 381 CDD KH-II_40S_S3 139 229 - -
Glsi06g0449 381 FunFam 40S ribosomal protein S3 135 226 - -
Glsi06g0449 381 ProSiteProfiles Type-2 KH domain profile. 155 226 IPR004044 GO:0003723
Glsi06g0449 381 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 144 233 IPR009019 GO:0003723
Glsi06g0449 381 NCBIfam 30S ribosomal protein S3 142 345 IPR005703 GO:0003735|GO:0006412|GO:0015935
Glsi06g0449 381 Pfam KH domain 154 227 IPR004044 GO:0003723
Glsi06g0449 381 ProSitePatterns Ribosomal protein S3 signature. 281 317 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0449 Glsi-ChrGlsi06 3829104 3835952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0449 135 374 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 85.833 9.11e-151 424