Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0446 ATGAAATCTGTCTCTATGACTTTAAAAGAAAGGGGAAAAAAGGGAAGGAGACACCTTGTTTTCGCCATGGCTTTTGGCGCAAAAGAGATGTACAGTTATGCTGGAATTCTGATAGTAGGAGCACTGGTAATTGCTGTTACATTTTTCAGTGTCACCATGCTTGGCTGGTGCACTTATAGAGTTATTAGTAACATATCATCTCTTCCACCAACACACATACCTGTTGATGACAAGTTCTCTTCTTCCTGCATGAATTTAGAGTCTCATTCAATTACATTCCAATATAAGGCAGCAGGAAGAGGGAGTGCAGAAGGGACTGACAAGAATGAATGCATTATCTGCTTGAATGCCTTTGAAGAAGAGGAAAGTGTGAGGCAGCTTCATAGTTGCAAACACATCTTTCATACAGCCTGCATTGATGTGTGGCTTGGCTCTCATTCTGGATGCCCTTTGTGCCGCACTCAGATTGACCGAGTGCCTTCTTCCCCAAAGGGGATTGAGAAAGTACCCTTTCCAAATGGGACTGTGGCTTCCGGTGAGAATTCTCAGATGATCTTGGTCATTGTCAGCCCCTAA 576 0.434 MKSVSMTLKERGKKGRRHLVFAMAFGAKEMYSYAGILIVGALVIAVTFFSVTMLGWCTYRVISNISSLPPTHIPVDDKFSSSCMNLESHSITFQYKAAGRGSAEGTDKNECIICLNAFEEEESVRQLHSCKHIFHTACIDVWLGSHSGCPLCRTQIDRVPSSPKGIEKVPFPNGTVASGENSQMILVIVSP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0446 191 SUPERFAMILY RING/U-box 110 159 - -
Glsi06g0446 191 CDD RING-H2_EL5-like 110 153 - -
Glsi06g0446 191 Pfam Ring finger domain 109 153 IPR001841 -
Glsi06g0446 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 158 IPR044675 -
Glsi06g0446 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Glsi06g0446 191 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Glsi06g0446 191 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0446 Glsi-ChrGlsi06 3809282 3811228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0446 89 156 C3H Transcription Factor Family AT1G72220 52.941 8.59e-17 75.5