Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0435 ATGATGAAGTGCTTATGTGGGGAAGACTCTTGTTTATGTTCTGGCCATTCAACATCCCCTTATGTTTTTGGTTGTCCATCACGGGGGAATTCTTCTGCATCTGATGTCCAGCAATCATCTGCATCTAAAAGTTTGAGCTTGAAAATGGGAGTTCTGCCACAACAATGTCATAATGCCAAGCCATTGAGTTTCCAATTTCAAGATCAGGATTCATCTTCATCTCAATCGACTGGTCAATCTTATCCTGAAGTGGGTTCAGCTCAATCAGGTCAAATTTCTATTCAGTTTAGCAATTCTTCTGCTCGTTCAACATGTAGCACAGCTGGGGGAGGTTTCATCAGGTCATCTATGGGAAGTCAGAGTTTTTCCTTTCCTCCTCTACAAGTGGATCAAAACCAATCAATTGCTCATATTGCATTCCACCATGCTGAACCATACTTGGATGGCGTACTAGCTGCTGCATATGGGCCACAGTCTAAGGTTCATCATGCCCAACTAATGGGATTGGCTTCGGTTCGAGTTCCTCTGCCTCTTGATCTTACGGAAGAACCCATATTTGTGAATGCAAAGCAGTACCATGCTATTATGAGGCGTAGACAATATCGTGCAAAACTTGAAGCACAGAACAAACTCATCAGAGATCGGAAACCATATCTTCATGAATCCCGGCATTTACATGCATTAAAGAGGGCTAGAGGTTCTGGTGGACGATTTCTCAACACCAAAAACCTCCAGGAATCAAAGCTCACAATAAGAAGCAATGGGCTAAATGTTTCTGGGGCTACTAGGTTGAATCTGAGTGGAACTATGTCAGAATCTGATGTCCATCGTGTAGAAAACTATAGAGATGGTGCTTGCACCACCTGTTCCGATGTCACAAGTGCATCTAATAGTGATGACATCTTCCAGCGACAGGAGTCCAGCTTCAGGCTCTCTGGTATTGGAAGGACTATGCAAGGCTACACAGCGGATATGGGTGGTGGCAGTGGGAATCAACACGGTCTGTCCGTCCTCATGTGA 1020 0.4431 MMKCLCGEDSCLCSGHSTSPYVFGCPSRGNSSASDVQQSSASKSLSLKMGVLPQQCHNAKPLSFQFQDQDSSSSQSTGQSYPEVGSAQSGQISIQFSNSSARSTCSTAGGGFIRSSMGSQSFSFPPLQVDQNQSIAHIAFHHAEPYLDGVLAAAYGPQSKVHHAQLMGLASVRVPLPLDLTEEPIFVNAKQYHAIMRRRQYRAKLEAQNKLIRDRKPYLHESRHLHALKRARGSGGRFLNTKNLQESKLTIRSNGLNVSGATRLNLSGTMSESDVHRVENYRDGACTTCSDVTSASNSDDIFQRQESSFRLSGIGRTMQGYTADMGGGSGNQHGLSVLM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0435 339 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 183 238 IPR001289 GO:0003700|GO:0006355
Glsi06g0435 339 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
Glsi06g0435 339 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Glsi06g0435 339 Gene3D - 181 242 - -
Glsi06g0435 339 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 307 IPR001289 GO:0003700|GO:0006355
Glsi06g0435 339 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
Glsi06g0435 339 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Glsi06g0435 339 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0435 Glsi-ChrGlsi06 3732723 3735435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0435 15 337 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.149 6.50e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi06g0435 CBFB_NFYA 5.9e-26 No_clan