Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0434 ATGGATGCTCGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGGGCAGGACTCATAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGGTTCCCTAGTGAGCAATGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCAGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGATTGGTTGTCTTTAGTTGCTGTCCACAGTGATGCGTGGTTACTGGCCATCGCATTCTACTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTACGGGTACAGCAAAGAAACAAGTCAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCTAAGTCCAACTCTAATGCACGGGGTTCAGAATCTCTGGGAAAGCATTCAAAGCCAATGCAATCAAGAGATGAGGAAGAAGGACTGGATGAGCTAGATGAAGATGAACATGGAGATACCTTGTGTGGGGCATGTGGTGAGAATTATGGTAACGATGAATTCTGGATTTGTTGTGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAACAATACAAGTGCCCGTCATGCAGCAACAAGAGAGCTCGCCCCTGA 762 0.4514 MDARAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQVKEKSSVSNHSGSKSKSNSNARGSESLGKHSKPMQSRDEEEGLDELDEDEHGDTLCGACGENYGNDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0434 253 FunFam PHD finger alfin-like protein 192 248 - -
Glsi06g0434 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Glsi06g0434 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Glsi06g0434 253 CDD PHD_AL_plant 199 249 IPR044104 -
Glsi06g0434 253 Pfam PHD-finger 200 249 IPR019787 -
Glsi06g0434 253 SUPERFAMILY FYVE/PHD zinc finger 191 250 IPR011011 -
Glsi06g0434 253 MobiDBLite consensus disorder prediction 145 174 - -
Glsi06g0434 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Glsi06g0434 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Glsi06g0434 253 SMART PHD_3 199 247 IPR001965 -
Glsi06g0434 253 MobiDBLite consensus disorder prediction 145 193 - -
Glsi06g0434 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0434 Glsi-ChrGlsi06 3725661 3731225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0434 5 252 Alfin-like Transcription Factor Family AT3G42790 76.210 7.61e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi06g0434 Alfin 2.7e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0434 06 3725661 3731225 Glsi07g0503 07 4422597 4427262 CCT
Glsi07g0503 07 4422597 4427262 Glsi06g0434 06 3725661 3731225 ECH
Glsi06g0434 06 3725661 3731225 Glsi06g0434 06 3725661 3731225 ECH