LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0429	ATGGCTATCACGCGAGCGCCTTCAAATGTGGGAGAAGGCCCTGCCCCCGGAGCCACGGTGATCGCCATTGATAAAGACAAGAACAGCAAACACGCTGTCAAATGGGCTGTTGATCACCTCTTAAAGAGCTCTTCTTGCACCCTTGTACATGTTCGCACCAAGACCTTGCATCCCCGTAGTATTATGACTTATGAGGATTATAAGATTGCAGCAAAGGAGTTGGTCCTGCATGACCTTGATATTCCAAGTGCCCTTACTGATTTTATCATTAACAACTCCATCAGCGATGTTGTTGTTGGGGCTTCTCACCGGAATGCTCTTACAAGGAAATTTAAAGATGCAGATGTGCCAACTAGCTTAGTCAGGTCTGTGCCTGAGTCCTGCACAATACATGTTATATCAAAAGGAAAAGTACAGAATATCAGACCGACAGGTCATCATCAAAACATTACAGTAACTACATCTGTAAAAGACACAGCCAGCCCCAACGGAAATTCTCAACCGGATCATTTGCATAAGCTTCTTTCAAATACCCCAGATTCTGAAGAAGCTAACAGAAATCCATTAAATCATGGATGTTGGCGAAGTTCAGGCCTTGGATTATCTTTTGGTCGAAACCATAATGCTATGCAGATGGTACCACATGAGCCAAGAGGAGAAGCTAATTCACCAAAACTATCATCTGAAAGCTCCTCGCCACAGAAATCTAATGAAAATCCCTATTCATTCATTAGTGACATTTCAGGGCCGCTTAGTGTTCAATCCAATGATAAGTTACATGAAAACCAAGAAGTATCCGTTAATGCAGACTGTTCCAGGATCCTCTCCTCTTCAAAAACCCTAAAAGGCTTGGAGACCGAAATAACGAAACTAAAAGTAGAACTGAGAAAAACAATGGAGAAATATAGTTCGGCCTGCAGAGAAGCTATTGCTGCAAAACAGAAGGCAATGGAGCTTGAACGGAATAGGGAAGAAGAAGAACGCAACATAGAAAAAGCTAGGCTCGCTGAAGAGGCTGCATTGGCTTTGGCAGACGTAGAGAGGGAGAAAACCAGGGCTGCAATGGAGTCAGCACAAATGGCAGAACGCCTAGCAGAAATGGAGACCCAGAAGAGAAAGCATGCAGAAATGAGAGCCGTGCTTGAGGAAGAGGGGAGGAAGAAAGCCGTAAATGCACTTGCACAAAATAGTATCCAATGTAGAATATACAGTATTGAAGAAATTGAGGTTGCAACAAACTACTTTGATAATGCACAGAAAATTGGTGAAGGTGGATACGGACCTGTTTATAGAGGGGTGCTTGATCACACTGCTGTTGCCATTAAGGTTGAAGTTTTGAGCACCATAAGACATCCGAACATGGTTCTTCTGCTAGGTGCCTGCCCAGAGTTTGGATGCCTTGTGTACGATTACTTGGAAAATGGCAGCTTAGAAGATCGTCTCTTCCAGAAAGATAACACTCCACCAATTCCATGGAAACTTCGGTTCAAAATAGCTGCAGAAATTGCCACTGGCCTTCATTTTCTTCACCAGACAAAACCTGAACCGTTGGTGCATCGAGACCTCAAGCCGGCAAATATCCTCTTAGACAGGAACTATGTGAGCAAGATTAGTGATGTGGGTTTGGCCAGGCTTGTTCCCCCATCCGTAGCTAACAAAACCACTCAATATCGCATGACAGCTGCAGCTGGTACATTTTGCTATATTGACCCCGAGTATCAACAAACAGGATTGTTGGGTGTCAAATCAGACATATACTCATTAGGTGTATTGCTCCTTCAAATTATTACTGGAAAGCCTCCTATGGGTTTGTCTAACGTGGTTGAGAAGGCTATCCAGAAAGGTAGATTTCCAGAGGTGCTTGATCCAAGTGTGACTGATTGGCCTGTTGAAGAGGTTTTATCATATGCTATGTTGGCTTTGAAGTGCTGTGAGTTGAGGAAACGGGACAGACCACGTCTTGGTTCTGTCATTTTGCCGGAGCTGGATCGACTCAAAGATCTAGAAGTGGACACTGACAATGATAACCCACCTGCAAGCCAGATTGGGAGAAGAAGGTGGCAGTCCTTCAAGTCCCCGACCAAGACATGGAGCGGGCAAGATGATTCGCGGGAACCGGGCTTCTTTGGCTTACCAACAACTGGGAAACATGGGGGCAAAACCAGCGACAAGGGTTCTTCATATCCAGACTGCTGGTCCTGGTCATTTACGCCTGATCGCGATTCAGAATCCAGTTTGCAACGCCAAACGCGCCTCTACAACCCCTACAAGGACCTCGAGGTCCCTATTCGAAATCTCTACCAGCTTCCTACCTCCCCTGAGTACCTTTTCGTCGAAGAGGCTCGCCGCAAACGCCGATCCTGGGGTGAGAACCTCACCTTCTACACTGGCTGCGGATACCTCGGCGGCGCCATCGGTGGTGCTGGCGCGGGACTTATCAGCGGCGTCAAATCCTTTGAATCTGGCGATACCACGAAGCTCCGGATTAACCGGGTTCTAAACGCATCCGGCCATACGGGTCGGGCTTGGGGTAACCGACTTGGTGTGATTGGGTTGCTTTATGCCGGTATCGAGAGTGGGATTGTGGCCGTTAGGGATACTGATGATGTCTGGAATAGTGTGGCGGCGGGGCTTGGCACGGGTGCATTGTATCGAGCTGCGAGAGGGGTGAGATCGGCTGCGGTGGCGGGAGCAGTTGGTGGAGTTCTCGTAGGTGTGGCTGTGACGGCGAAGCAGGCATTGAAACGCTACGTGCCAGTATGA	2763	0.4734	MAITRAPSNVGEGPAPGATVIAIDKDKNSKHAVKWAVDHLLKSSSCTLVHVRTKTLHPRSIMTYEDYKIAAKELVLHDLDIPSALTDFIINNSISDVVVGASHRNALTRKFKDADVPTSLVRSVPESCTIHVISKGKVQNIRPTGHHQNITVTTSVKDTASPNGNSQPDHLHKLLSNTPDSEEANRNPLNHGCWRSSGLGLSFGRNHNAMQMVPHEPRGEANSPKLSSESSSPQKSNENPYSFISDISGPLSVQSNDKLHENQEVSVNADCSRILSSSKTLKGLETEITKLKVELRKTMEKYSSACREAIAAKQKAMELERNREEEERNIEKARLAEEAALALADVEREKTRAAMESAQMAERLAEMETQKRKHAEMRAVLEEEGRKKAVNALAQNSIQCRIYSIEEIEVATNYFDNAQKIGEGGYGPVYRGVLDHTAVAIKVEVLSTIRHPNMVLLLGACPEFGCLVYDYLENGSLEDRLFQKDNTPPIPWKLRFKIAAEIATGLHFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVANKTTQYRMTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVLLLQIITGKPPMGLSNVVEKAIQKGRFPEVLDPSVTDWPVEEVLSYAMLALKCCELRKRDRPRLGSVILPELDRLKDLEVDTDNDNPPASQIGRRRWQSFKSPTKTWSGQDDSREPGFFGLPTTGKHGGKTSDKGSSYPDCWSWSFTPDRDSESSLQRQTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTGCGYLGGAIGGAGAGLISGVKSFESGDTTKLRINRVLNASGHTGRAWGNRLGVIGLLYAGIESGIVAVRDTDDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGVLVGVAVTAKQALKRYVPV	920

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0429	920	Pfam	Protein kinase domain	443	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0429	920	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	20	121	-	-
	Glsi06g0429	920	MobiDBLite	consensus disorder prediction	156	189	-	-
	Glsi06g0429	920	SUPERFAMILY	Protein kinase-like (PK-like)	395	657	IPR011009	-
	Glsi06g0429	920	Gene3D	Phosphorylase Kinase; domain 1	444	475	-	-
	Glsi06g0429	920	MobiDBLite	consensus disorder prediction	223	249	-	-
	Glsi06g0429	920	Coils	Coil	281	356	-	-
	Glsi06g0429	920	Coils	Coil	364	384	-	-
	Glsi06g0429	920	MobiDBLite	consensus disorder prediction	156	185	-	-
	Glsi06g0429	920	SMART	serkin_6	415	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0429	920	ProSiteProfiles	Protein kinase domain profile.	415	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0429	920	Gene3D	Transferase(Phosphotransferase) domain 1	476	680	-	-
	Glsi06g0429	920	CDD	STK_N	19	136	-	-
	Glsi06g0429	920	PANTHER	OS02G0152300 PROTEIN	20	676	-	-
	Glsi06g0429	920	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	517	529	IPR008271	GO:0004672\|GO:0006468
	Glsi06g0429	920	FunFam	Os07g0541700 protein	472	563	-	-
	Glsi06g0429	920	Gene3D	Phosphorylase Kinase; domain 1	393	443	-	-
	Glsi06g0429	920	Pfam	Tim17/Tim22/Tim23/Pmp24 family	794	903	-	-
	Glsi06g0429	920	MobiDBLite	consensus disorder prediction	214	249	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0429	Glsi-ChrGlsi06	3696461	3705249	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0429	17	668	Receptor kinase-like Gene Family	AT1G78940	45.225	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Glsi06g0429		Pkinase	1.3e-30	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi06g0429	06	3696461	3705249	Glsi07g0492	07	4000205	4001456	CCT