Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0422 ATGCTTCCGAAACTACCAGGGTCTAATATATTTGGGGACAAAGGGAAAAAGATAAAAGGGAAGGTGGTGTTGATGAAGAAGAATGTGTTAGACGTCAACAACTTTGTTTCCTCAATGCTTGATGGTTTTAGTGAGCTTCTTGGCCAACGTGTTTCTCTCCAGCTGGTTAGTGCTGTCCATGCTGACACTGGAAACGGTCAGAAAGGGAAGATTGGGAAGCCTGCAAATCTGGAAAGATGGAATACCATATTGCCACCCTTACTGGCAGGCCAATCTGTAATGACAGTTAATTTTGATTGGGAAGATGATATAGGGATTCCTGGAGCATTTATCATAAAGAATCATCATGTCGATGAGTTTTTCCTTACATATCTTCCAAGTGAAACCCCAGCACCATTGGTGAAGTATAGAGAAGAAGAATTAGTGAGCCTAAGAGGAGATGGAACAGGAGAGCGCAAAGAATGGGATAGAATATATGATTATGCCACCTACAATGATTTGGGTGATCCAAATTCTGCAGAGAAGGTTCGTCCAATTCTTGGAGGCTCAACCACATATCCCTACCCTCGTAGGGGAAGAACTGGTAGACCTCCGGCAAAGAAAGATCCTAACAGTGAGAGCAGGCTGGGTTCCTTTAGTTCCTTAGACATTTACGTTCCAAGAGATGAAAAGTTTGGTCACTTGAAGATGGCAGACTTTCTTGCTTACGGCCTGAAATCTGTATCGCAAAGTCTCCTACCGAAGTTAGACATTTTAAATAGTGAGTTTGATAGCTTTGAAGAAGTCCTTAAGCTCTATGAAGGGGGAATCAAGTTGCCAGTTCTCCACGCTATTGATAACCCATTGAATGCACAAATGCTCAAGGAACTTTTCCGGACTGATGGTGAAGGCTTCCTCAAATTTCCAACTCCTCAAGTCATTAAAGAAAATAAATCTGGATGGATGACTGATGAGGAATTTGCAAGAGAAATGATTGCTGGTGTAAATCCGGGCTTAATTCGTTTACTTCAAGAGTTTCCACCCGAAAGCAAGCTTGATAAAAGTGTCTACGGAGATCAAACCAGTACAATAACCAAAGAGCACTTAGAGATTAAACTAGGTGGGCTCACCGTAGATGAGGCTATCAAGAACAAGAAATTATTCATATTGGATCACCATGACGCAATCATACCATATTTGAGGCGAATAAACTCAACTTCTACAAAGGCATATGCTGCTAGGACAATTCTTTTCTTGCAAGAAGATGGAACTCTAAAGCCATTAGCCATTGAATTGAGCACACCCCATCCTGATGGAGATCAATTTGGTGTCAATAGCAAAGTCTACTTGCCTGCAGATCAGGGTGTTGAAAGTTCCATTTGGCAATTGGCCAAAGCTTATGTTGTCGTGAATGATTCTTGCTATCACCAACTAGTCAGCCATTGGTTAAATACTCATGCAGTGATTGAGCCATTTGTCCTAGCGACAAATAGGCAACTCAGTGTGCTTCACCCTATTAATAAACTTCTTCATCCTCACTATCGTGACACTATGAATATAAATGCTCTTGCACGTCAAGTCCTAATCAATGCAGGAGGCATTATAGAATCATCATTCTTGTGGGGAAAGTATGCGTTAGAGATGTCAGCTGTGATTTACAAAAATTGGGTATTTCCTGAACAAGCACTTCCTGTTGATCTTATCAAGAGGGGAATAGCAGTTGAAGATCCAGCGGCCCCACATGGCCTTCGCCTGGTGATTGAAGATTACCCTTATGCTGTAGATGGACTAGATATATGGTCTGCTATAAAGACATGGGTCCAAGACTATGTTTCTTTCTACTACAAGACTGATGATGCTATCAAGCAAGACACTGAACTCCAATCTTGGTGGAAAGAACTTGTAGAAATAGGTCATGGGGATAAGAAAAATGAGCCATGGTGGTTTAAGATGCAAACTCGTGAAGAGCTAATTGAAACTTGCTCTATAATTATCTGGATCTCTTCAGCCCTTCACGCAGCTGTCAATTTTGGACAATACCCTTTTGGAGGATACATTGTAAATCGCCCAACTCTGAGTAGAAGATTCATGCCCGAGAAAGGAACTCCAGAGTATGATGAACTGGTGAAAGACCCTCATAAGGCTTTCTTGAAGACTATTACACCAAAGTCACAAGCCATTATTGACCTTTCTACTATAGAAATATTGTCAAGGCATAGTTCTGATGAGTTCTACCTTGGCCAGAGAGATAGCTCTATTTGGACATCTGATGCAACCCCATTAGACGCTTTTAAGAAGTTTGGAAAGAAATTGGAAGAAATTGAGGAGACAATTGTCCAAAGGAACAAAGATGGGAAACTGAGGAACCGATATGGACCAGTTGAAATGCCTTACACTCTGCTTTATCCTAGAAGTGATGTCGGGCTAACTGGCAAGGGCATTCCAAATAGCTCAAAACGCAGCGAATTAGTGTTCTACTCTTCCAGAGACTGTGCTGTTCGGGAAAGTGAGAGAACAGTGAAGAGGTACCCAATGGGAAATCAGAAGCAAAAGTGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCATGGTCCCGGCAAGTGGAAGAACATTCTCAAAGATCCCGATTTTGCACCTTTCCTCACTCACCGTTCCAACATTGACCTTAAGGATAAATGGCGGAACTTAAGTGTTAATACTGCCGCTCAAGGCTCAAAAGATAAAGCAAGGAATCCCAAGGTTAAAGCTGTTACTACTGCCCCAGTTTCCAGTGTACAAAATGCTACTCCTGCTGCTCCAGTTCGTCAAAGTGCAACTTCTGATGCTGTCATGGATGATTCTTCTCAAAATGCACAGGATGTCAAGCATGCTCCACGGTATAATGGAATGGTTTTTGAAGCTCTCTCAACAATAAACGATACTAATGGTTCTGACATAAATGCCATTGTTAGTTTCATTGAGCAAAGGCATGAAGTTCCTCAAAATTTCAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAAAAGGTACAGAATTGTTACAAGATAAAAAAGGACACCCCTTCTGGGGCGAAAACACCTCCATTGAAACAAAGGGATGTCTGGCCACATCAACAGCCAGCCTCTGGTTTAGTGGCAACTAACGAGACAGTTAAGGATGTCGCTGATATCACAGCCTACAGAATCGCTGAAGCCGAGAACAAATCATTTTTGGCTGCTGAGGCACTTAAGGAGGTAGAAAGAATGTCAAAGTTGGCTGAAGATGCTGATTCAATCTTACAGCTAATGAAAGAGATTAGTGGACAATGTACTGCTGATAAACATCTCTATCTACGTATTAATAATATTTTTATAAACCATACGTTAACACAAAATAATAATGGTTCTTGTGGGTCTGCTGATGCAGGTTCGCACGGTGAAGTTATTCTCTTGGCTGAAAGTTGGTGA 3456 0.4187 MLPKLPGSNIFGDKGKKIKGKVVLMKKNVLDVNNFVSSMLDGFSELLGQRVSLQLVSAVHADTGNGQKGKIGKPANLERWNTILPPLLAGQSVMTVNFDWEDDIGIPGAFIIKNHHVDEFFLTYLPSETPAPLVKYREEELVSLRGDGTGERKEWDRIYDYATYNDLGDPNSAEKVRPILGGSTTYPYPRRGRTGRPPAKKDPNSESRLGSFSSLDIYVPRDEKFGHLKMADFLAYGLKSVSQSLLPKLDILNSEFDSFEEVLKLYEGGIKLPVLHAIDNPLNAQMLKELFRTDGEGFLKFPTPQVIKENKSGWMTDEEFAREMIAGVNPGLIRLLQEFPPESKLDKSVYGDQTSTITKEHLEIKLGGLTVDEAIKNKKLFILDHHDAIIPYLRRINSTSTKAYAARTILFLQEDGTLKPLAIELSTPHPDGDQFGVNSKVYLPADQGVESSIWQLAKAYVVVNDSCYHQLVSHWLNTHAVIEPFVLATNRQLSVLHPINKLLHPHYRDTMNINALARQVLINAGGIIESSFLWGKYALEMSAVIYKNWVFPEQALPVDLIKRGIAVEDPAAPHGLRLVIEDYPYAVDGLDIWSAIKTWVQDYVSFYYKTDDAIKQDTELQSWWKELVEIGHGDKKNEPWWFKMQTREELIETCSIIIWISSALHAAVNFGQYPFGGYIVNRPTLSRRFMPEKGTPEYDELVKDPHKAFLKTITPKSQAIIDLSTIEILSRHSSDEFYLGQRDSSIWTSDATPLDAFKKFGKKLEEIEETIVQRNKDGKLRNRYGPVEMPYTLLYPRSDVGLTGKGIPNSSKRSELVFYSSRDCAVRESERTVKRYPMGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPDFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKVKAVTTAPVSSVQNATPAAPVRQSATSDAVMDDSSQNAQDVKHAPRYNGMVFEALSTINDTNGSDINAIVSFIEQRHEVPQNFRRALSTRLRRLVAQGKLEKVQNCYKIKKDTPSGAKTPPLKQRDVWPHQQPASGLVATNETVKDVADITAYRIAEAENKSFLAAEALKEVERMSKLAEDADSILQLMKEISGQCTADKHLYLRINNIFINHTLTQNNNGSCGSADAGSHGEVILLAESW 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0422 1151 SMART LH2_4 16 147 IPR001024 GO:0005515
Glsi06g0422 1151 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 841 898 IPR017930 -
Glsi06g0422 1151 FunFam Lipoxygenase 448 812 - -
Glsi06g0422 1151 Pfam Lipoxygenase 133 796 IPR013819 GO:0016702|GO:0046872
Glsi06g0422 1151 SMART sant 841 896 IPR001005 -
Glsi06g0422 1151 MobiDBLite consensus disorder prediction 915 952 - -
Glsi06g0422 1151 MobiDBLite consensus disorder prediction 1021 1040 - -
Glsi06g0422 1151 ProSitePatterns Lipoxygenases iron-binding region signature 2. 496 506 IPR020834 GO:0016702|GO:0046872
Glsi06g0422 1151 Pfam Myb-like DNA-binding domain 842 893 IPR001005 -
Glsi06g0422 1151 FunFam Lipoxygenase 313 446 - -
Glsi06g0422 1151 MobiDBLite consensus disorder prediction 173 208 - -
Glsi06g0422 1151 ProSitePatterns Lipoxygenases iron-binding region signature 1. 469 483 IPR020833 GO:0016702|GO:0046872
Glsi06g0422 1151 Gene3D - 950 1031 IPR036388 -
Glsi06g0422 1151 Gene3D - 229 312 IPR027433 -
Glsi06g0422 1151 ProSiteProfiles Myb-like domain profile. 841 894 IPR001005 -
Glsi06g0422 1151 Gene3D - 447 811 - -
Glsi06g0422 1151 PRINTS Lipoxygenase signature 451 468 IPR013819 GO:0016702|GO:0046872
Glsi06g0422 1151 PRINTS Lipoxygenase signature 469 486 IPR013819 GO:0016702|GO:0046872
Glsi06g0422 1151 PRINTS Lipoxygenase signature 489 509 IPR013819 GO:0016702|GO:0046872
Glsi06g0422 1151 Pfam linker histone H1 and H5 family 955 1015 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi06g0422 1151 PANTHER LIPOXYGENASE 15 810 IPR000907 GO:0016702|GO:0034440|GO:0046872
Glsi06g0422 1151 CDD SANT_TRF 843 893 - -
Glsi06g0422 1151 SUPERFAMILY Homeodomain-like 839 895 IPR009057 -
Glsi06g0422 1151 FunFam Lipoxygenase 125 228 - -
Glsi06g0422 1151 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 123 813 IPR013819 GO:0016702|GO:0046872
Glsi06g0422 1151 Gene3D - 128 228 - -
Glsi06g0422 1151 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 16 125 IPR036392 GO:0005515
Glsi06g0422 1151 SUPERFAMILY "Winged helix" DNA-binding domain 953 1029 IPR036390 -
Glsi06g0422 1151 Gene3D PLAT/LH2 domain 9 127 - -
Glsi06g0422 1151 FunFam Telomere repeat-binding factor 1 845 924 - -
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 726 740 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 187 206 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 253 274 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 116 137 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 338 357 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 404 428 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 155 171 IPR001246 GO:0016491
Glsi06g0422 1151 PRINTS Plant lipoxygenase signature 299 315 IPR001246 GO:0016491
Glsi06g0422 1151 SMART h15plus2 951 1016 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi06g0422 1151 SUPERFAMILY Lipoxigenase 125 810 IPR036226 -
Glsi06g0422 1151 FunFam Telomere repeat-binding factor 1 839 895 - -
Glsi06g0422 1151 Gene3D - 313 446 - -
Glsi06g0422 1151 Gene3D - 838 895 - -
Glsi06g0422 1151 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 953 1021 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0422 Glsi-ChrGlsi06 3614393 3627740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0422 16 810 Acyl Lipid Metabolism Gene Families AT1G55020 61.356 0.0 1064
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi06g0422 Lipoxygenase 0 No_clan