Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0420 ATGCGCCTTTTGCCGCGGTGGAAAGGACCCAAGGAGACAATCTGGGGTACAAAAGCATTGTCATCGCCTACTCCGACCGTCTGGGTTATGGCAGGTTTGGCTCCAGAGGGAACGCAATTTGATGCTCGTCAATATGATGCTAAAATGAGTGAATTGCTTTCTGCTGATGGACAAGAATTCTTCACCTCATATGACGAGGTCTATGATAGTTTTGATGCTATGGGACTACAAGAAAATCTTCTGAGAGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTAATTCAACAGGCTCAGTCTGGAACTGGCAAGACCGCTACATTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTTTAATTCAGTGCCAGGCTTTGGTTTTGGCGCCAACAAGGGAGCTAGCACAGCAGATTGAGAAGGTTATGCGAGCACTTGGTGATTACCTCGGTGTTAAGGTTCACGCTTGTGTAGGTGGCACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATGTTGTAGTCGGAACTCCTGGTCGTGTGTTCGACATGCTACGGAGGCAGTCTCTTCGCCCTGATCACATAAGGATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCAGGTAAAATCCAGGTTGGAGTGTTCTCTGCTACAATGCCTCCAGAAGCACTTGATATTACAAGGAAATTCATGAATAAGCCAGTGAGAATATTGGTAAAGCGTGATGAACTGACCCTTGAGGGTATCAAGCAGTTTTATGTTAATGTTGATAAGGAAGAGTGGAAACTAGAGACATTATGTGACCTTTACGAGACACTGGCCATCACCCAGAGTGTCATTTTTGTGAACACTAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTCTCCGCAACTCACGGTGACATGGACCAAAACACTCGGGATATTATCATGCGTGAATTCCGGTCTGGCTCTTCTAGAGTTCTGATTACGACTGATCTCTTGGCTCGTGGTATTGATGTGCAGCAAGTTTCTCTTGTTATCAACTATGATCTGCCAACCCAACCTGAAAACTATCTTCATCGCATAGGGCGAAGTGGACGATTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACGTTGGATGATGCCAGAATGCTCTCTGATATTCAGAAGTTCTATAACGTAACAGTAGAGGAGCTCCCATCAAATGTTGCTGATCTGCTCTGA 1329 0.4575 MRLLPRWKGPKETIWGTKALSSPTPTVWVMAGLAPEGTQFDARQYDAKMSELLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTVEELPSNVADLL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0420 442 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 426 - -
Glsi06g0420 442 FunFam Eukaryotic initiation factor 4A-II 57 276 - -
Glsi06g0420 442 Pfam DEAD/DEAH box helicase 94 255 IPR011545 GO:0003676|GO:0005524
Glsi06g0420 442 Gene3D - 59 277 IPR027417 -
Glsi06g0420 442 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 216 224 IPR000629 -
Glsi06g0420 442 SMART ultradead3 88 285 IPR014001 -
Glsi06g0420 442 FunFam Eukaryotic initiation factor 4A-III 277 442 - -
Glsi06g0420 442 SMART helicmild6 322 403 IPR001650 -
Glsi06g0420 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 270 IPR014001 -
Glsi06g0420 442 CDD SF2_C_DEAD 282 412 - -
Glsi06g0420 442 Gene3D - 278 442 IPR027417 -
Glsi06g0420 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 423 IPR027417 -
Glsi06g0420 442 Pfam Helicase conserved C-terminal domain 295 403 IPR001650 -
Glsi06g0420 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 281 442 IPR001650 -
Glsi06g0420 442 CDD DEADc_EIF4A 73 271 - -
Glsi06g0420 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 69 97 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0420 Glsi-ChrGlsi06 3598927 3603735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0420 30 442 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0420 06 3598927 3603735 Glsi07g0456 07 3532507 3537223 CCT