Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0417 ATGGAACCTCGAGTTGGGAACAAGTTTCGTCTTGGGCGGAAGATTGGTAGCGGATCGTTCGGGGAGATCTATCTTGGTACTAATATTCAGACTAATGAAGAGGTTGCAATTAAGCTCGAAAGTGTCAAGACCAAGCATCCTCAGCTGTTGTATGAATCGAAGTTATATAAAATACTGCAAGGAGGAACTGGAATTCCATATGTGAGATGGTTTGGTGTTGAAGGAGACTACAATGTGCTTGTGATGGATTTACTAGGTTCTAGTCTTGAGGATTTATTCAATTTCTGTGGTCGGAAATTGTCACTTAAAACTGTTCTCATGCTCGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTATATGTCATTGACTTTGGCCTTGCAAAGAAATACAGAGATACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGACTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCACTCTGTCGTGGATATCCCTCAGAATTTGCATCATACTTCCATTACTGTCGATCACTGCGGTTTGAGGATAAGCCAGATTATGCATATCTGAAAAGACTTTTCCGTGACCTTTTCATTCGAGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATATTGAAATATCAGCAATCCCAAATCACTACTCCTCCTACCCGTGCTATTGTTCCTGGTGCTGGACCAAGTTCTGGCATGCCACCAGTTATTGCAAATGCTGATAGACATTCAGGTGGGGAAGATGGAAGGCACACTGGTTGGTCTTCATCAGATCCTACTCGTAGGAGAAATGCTGGACCTTTTGCTAGTGATGGTATTTTATCTAGACAAAAAGCCCCAGTTGCAAATGACTCGACTGTATCAAAAGATGTAATGTTGTCAAGTTCTAATTTCTTCCGGTCAAGTGGATCTTCAAGGCGAGGTGCAGTCTCCAACAGTCGTGATACAGCTAATGTTGGTAGTGAGACTGAGCCCTCTCGAGCTCTTCCCATTGATGCAAGTCCTGGAGCACTCCGAAAAATCTCTGGTGCTCAGCGAAGTTCACCTATAATATCAGCGGAGCACAACAAAACCTCATCTGGGAGAAGCACTTCAAACATAAAGAATTTTGAGTCAACTCTCAGAGGTATTGAGGGCCTGCATTTCAATGACGAAAGGGTACAGTATTGA 1425 0.4189 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGTGIPYVRWFGVEGDYNVLVMDLLGSSLEDLFNFCGRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFEDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQITTPPTRAIVPGAGPSSGMPPVIANADRHSGGEDGRHTGWSSSDPTRRRNAGPFASDGILSRQKAPVANDSTVSKDVMLSSSNFFRSSGSSRRGAVSNSRDTANVGSETEPSRALPIDASPGALRKISGAQRSSPIISAEHNKTSSGRSTSNIKNFESTLRGIEGLHFNDERVQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0417 474 MobiDBLite consensus disorder prediction 328 342 - -
Glsi06g0417 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0417 474 CDD STKc_CK1_delta_epsilon 8 282 - -
Glsi06g0417 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Glsi06g0417 474 FunFam Casein kinase I isoform delta-like 1 308 - -
Glsi06g0417 474 MobiDBLite consensus disorder prediction 311 451 - -
Glsi06g0417 474 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Glsi06g0417 474 MobiDBLite consensus disorder prediction 364 408 - -
Glsi06g0417 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Glsi06g0417 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0417 474 FunFam Putative Casein kinase I 1 85 - -
Glsi06g0417 474 PANTHER CASEIN KINASE-RELATED 9 384 - -
Glsi06g0417 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Glsi06g0417 474 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0417 474 MobiDBLite consensus disorder prediction 430 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0417 Glsi-ChrGlsi06 3585106 3589714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0417 8 229 MAP Kinase Kinase Kinase AT1G54960 25.214 2.00e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi06g0417 Pkinase 1.1e-26 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0417 06 3585106 3589714 Glsi07g0454 07 3518892 3524021 CCT