Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0416 ATGGCTCGAGGGAGGATAAGGGCAAGGCTTCGGAGGAGCAATCTTTACACATTTGCTTGCCTTCGGTCTCCGGCCACTGAGGAGGGGCCCCATTCTCTTGAAGGTCCTGGCTTCTCACGATATGTATATTGCAACCAGCCTCATCTCCATGAAAAGAAACCTCTATATTATTGCAAGAATCATATATCAACAACAAAATACAATATCATCACATTTTTGCCCAAGGCTCTCTTTGAGCAATTTCGACGGGTAGCTAATATATATTTCCTTTTGGCTGCATGCCTCTCAGCCTCTCCAATTTCACCTTTCACACCTGTGAGCATGATTGCCCCTTTGGCTTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTGGCGTAGGTTCCTTCAGGATATCAAAGTTAATCGCCGGAAAGTTAGTGTCCATAACGGCAACGGTGTTTTTGGTTTTAGGGAATGGCAGAAGATAATGGTTGGGGATGTGGTAAAAGTAGAAAAGGATCAATTTTTTCCTGCTGACTTGCTTCTCTTATCATCAAGTTATGAAGATGGGATATGCTATGTGGAAACTATGAATTTAGATGGTGAAACGAACTTGAAGGTGAAAAGATCTCTGGAGGTTACCTTGCCCCTGATTGATGATGAGGCTTTTAAGGATTTCATTGGGACAATACGTTGTGAAAACCCAAATTCCAGTCTTTACACATTTGTTGGAAACCTTGAGTATGAACATGAGCTTTATCCTATTGATCCTTGTCAAATTCTCCTCCGAGATTCAAAGCTCAGGAACACTGATCATGTCTATGGGGTGGTCATTTTCACAGGTCATGATAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCAGAATAGAAAAAAAGATGGATTATATCATATATCTTCTTTTCACAGTCCTTATTTTGATATCTTTAATCAGTTCAATAGGATTTGCTGTAAAGACCAAATTCCAAACCCCAGATTGGTGGTACTTACGGCCCAAGGAAACTGAGTACCAGTATGATCCCAACAATGCTACGTTGGCTGGGATGAGTCATCTGGTTACTGCACTCATTCTTTATGGATATTTGATACCAATATCACTTTATGTGTCAATTGAGGTTGTGAAGGTTCTACAAGCAACCTTCATCAACCAAGACCTACAAATGTATGATGAAGAAACTGGGACTCCAGCTGATGCACGGACATCAAATTTGAATGAAGAGCTGGGCCAGGTAGACACTATCCTTTCTGATAAGACCGGTACTTTAACCTGTAATCAGATGGATTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGAGTCCGCTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGATCAGGATTCAGATCTCTCTAATTTCCCCATGCGTAAAATTAAAGGACATGGTTCAAGGCAAAATGCTACAACAGTTGAAGAAATTGAACTGGAGACTTTTGTTGCTTCCAAGGGTGATGAAAATAAAAGGCCTGCCATAAAGGGATTCTGTTTTGAGGACCATCGCCTCATGAATTGTAACTGGTTGAAAGAGCCCAATGCTGATGTCCTTTTGTTGTTTTTCCGAATATTAGCAGTTTGCCATACCGCCATTCCTGAGCTGAATGAGGAGACTGGCAGTTTTACATATGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTGCAGCGGCAAGAGAATTTGGTTTTGAGTTTTGTAGAAGAAATCAATCAAGTGTTTTCATCCGTGAAAGAATTTCTCCTTCAGAACAACCAGTTGAAAGGGAGTACAAAATCCTGAATCTGTTGGACTTCACTAGCAAAAGAAAGCGGATGTCAGTGGTTGTACATGATGAGGATGGCGGCATTTTTCTTCTGTGCAAAGGGGCTGACAGCATCATATTTGATCGATTGTCAAAGAATGGAAAAATGTATCTGGAGGCTACTACCAGACATTTAAATGAATATGGAGAAACTGGTTTGCGAACGCTAGCCTTGGCTTATAGAAAACTTGATGAGGATGAGTATGCTGCTTGGAACAATGAGTTTCAGAAAGCCAAAACAGCTGTTGGGTCTGACCGAGAGGAAATGCTTGAGAAGGTATCAGATATGATTGAAAGAGAATTGATTCTTGTTGGGGCTACTGCTGTAGAAGACAAACTGCAAAAAGGGGTGCCCCAATGCATCGATAAACTTGCTCAGGCTGGTCTCAAGCTCTGGGTGTTAACAGGGGATAAGATGGAAACCGCAATCAACATTGGATTTGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAGATATGTATCACTACTATGAACTCAGACTCATTAACCAGCGATGGAAAAGAGGTCATCAAGGAGAACATTTTAAACCAAATCACCAATGCCTCACAAATGATTAAGCTGGAGAAAGATCCACATGCTGCATTTGCTTTAATTATTGATGGTAAAACTCTGACATATATTTTAGAAGATGATATGAAGCATCAGTTTTTGGGATTGGCTGTTGAATGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAACAAAAGGCATTGGTAACAAGGTTAGTGAAAGAAGGAACTGGGAAGACCACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATCGGTGTTGGTATTAGTGGGGTTGAAGGCATGCAGGCGGTGATGGCTAGTGATTTTGCCATTGCCCAATTTCGGTTTTTGGAGCGTCTTTTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCGCAAATGATATGCTACTTCTTCTACAAAAATATAGCATTTGGCCTTACCATCTTCTATTTTGAGGCCTTTACGGGCTTCTCTGGGCAATCAGTTTATGATGACTGGTACATGATATTGTTCAACGTTGTTCTGACATCATTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTTCATCGGAAGTTTGCCTACAGTTTCCTGCACTGTATCAGCAAGGACCCAGAAATTTGTTCTTTGACTGGTATAGGATATTGGGATGGATGGGAAATGGTCTCTATTCCTCCCTTATTATCTTCTTCCTTAACGTCATCATCTTCCACGATCAAGCATTCTGTGCTGAAGGTCAGACTGCTGATATGGCTGCTGTTGGTACCACAATGTTCACTTGCATCATTTGGGCTGTCAACTGCCAGATTGCATTAACAATGAGCCATTTTACATGGATCCAACACCTGCTTGTCTGGGGCAGCATAATCACTTGGTACCTATTTCTCATGCTATATGGCATGATTTCTCCGTACTATTCCAAGAATGCCTACCAAATACTAGTTGAAGCTCTTGGTCCTGCACCTCTTTATTGGCTAGCAACCATTTTAGTAACAGTTGTATGCAATCTTCCTTATCTTGCCCATATCTCTTTCCAAAGATGTTTCAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGATATTGAGGATCAAAACATGTGGACTAGGGAGAGGTCTAAAGCAAGACAGGAGACCAAGATTGGGTTCACAGCAAGAGTGGAAGCCAAGATCAGGCACTTGAAAGGGAGGCTGCAGAAAAAGCAATCATCCTTAGGTGTTTTGTCCCCATCATGA 3675 0.4169 MARGRIRARLRRSNLYTFACLRSPATEEGPHSLEGPGFSRYVYCNQPHLHEKKPLYYCKNHISTTKYNIITFLPKALFEQFRRVANIYFLLAACLSASPISPFTPVSMIAPLAFVVGLSMAKEALEDWRRFLQDIKVNRRKVSVHNGNGVFGFREWQKIMVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVTLPLIDDEAFKDFIGTIRCENPNSSLYTFVGNLEYEHELYPIDPCQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSRIEKKMDYIIYLLFTVLILISLISSIGFAVKTKFQTPDWWYLRPKETEYQYDPNNATLAGMSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDLQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEDQDSDLSNFPMRKIKGHGSRQNATTVEEIELETFVASKGDENKRPAIKGFCFEDHRLMNCNWLKEPNADVLLLFFRILAVCHTAIPELNEETGSFTYEAESPDEGAFLAAAREFGFEFCRRNQSSVFIRERISPSEQPVEREYKILNLLDFTSKRKRMSVVVHDEDGGIFLLCKGADSIIFDRLSKNGKMYLEATTRHLNEYGETGLRTLALAYRKLDEDEYAAWNNEFQKAKTAVGSDREEMLEKVSDMIERELILVGATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGFACSLLRQGMKQICITTMNSDSLTSDGKEVIKENILNQITNASQMIKLEKDPHAAFALIIDGKTLTYILEDDMKHQFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLNVIIFHDQAFCAEGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIITWYLFLMLYGMISPYYSKNAYQILVEALGPAPLYWLATILVTVVCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQNMWTRERSKARQETKIGFTARVEAKIRHLKGRLQKKQSSLGVLSPS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0416 1224 CDD P-type_ATPase_APLT_Dnf-like 60 1040 - -
Glsi06g0416 1224 FunFam Phospholipid-transporting ATPase 724 921 - -
Glsi06g0416 1224 FunFam Phospholipid-transporting ATPase 118 288 - -
Glsi06g0416 1224 Gene3D - 724 921 IPR023214 -
Glsi06g0416 1224 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Glsi06g0416 1224 SFLD p-type atpase 405 932 IPR044492 -
Glsi06g0416 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Glsi06g0416 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1159 IPR032630 -
Glsi06g0416 1224 Pfam Cation transport ATPase (P-type) 546 651 - -
Glsi06g0416 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1178 - -
Glsi06g0416 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1154 IPR023298 -
Glsi06g0416 1224 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Glsi06g0416 1224 FunFam Phospholipid-transporting ATPase 591 722 - -
Glsi06g0416 1224 NCBIfam HAD-IC family P-type ATPase 853 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0416 1224 Coils Coil 448 468 - -
Glsi06g0416 1224 Gene3D - 119 289 - -
Glsi06g0416 1224 SUPERFAMILY HAD-like 410 925 IPR036412 -
Glsi06g0416 1224 SFLD Haloacid Dehalogenase 405 932 - -
Glsi06g0416 1224 SUPERFAMILY Calcium ATPase, transduction domain A 148 286 IPR008250 -
Glsi06g0416 1224 Gene3D - 434 481 IPR023299 GO:0000166
Glsi06g0416 1224 Gene3D - 570 723 IPR023299 GO:0000166
Glsi06g0416 1224 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Glsi06g0416 1224 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Glsi06g0416 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Glsi06g0416 1224 Gene3D - 419 433 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0416 Glsi-ChrGlsi06 3575696 3581529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0416 1 1222 Primary Pumps ATPases AT1G17500 75.899 0.0 1946