Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0410 ATGGGGCATCACTCTTGCTGCAACAAACAGAAGGTCAAAAGAGGGTTATGGTCACCGGAAGAGGATGAAAAACTCATCAACTACATCACCACTTACGGACATGGTTGCTGGAGCTCAGTCCCTAAACTTGCTGGCCTTCAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTTCTCAAGAAGCAGCTCTCATTATAGAACTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCCTAAAGAAGAGGCTTCTTTCTCGTGGTATGGTTCCTTCTTTAGCAACATTTTCTGATATCCATCACAGCCCTGGTTGTAATGGTTCTGTGGAAAGCTTCTTTCCTTTAACTGCAAACCCTAGTGTGATCCTGAACTCTCATCATCATCTTCAACCAGATCAGCTATACCTGCCCTCTTCATCACCAATCCTACAAGTTCTTGATCATGATGATTATAATGCCAATTTCCTTCATATTCAGACTCCTATGCCACAAAAACCACCCATTAATTCATTACCATGTGAAGATCAAACATGGTCAATGGGCTACCTACCTCTTCATCTGAGTCCAAATCAAGAAAATCAAATCACCAGAAGTAGTAATGCTGCCACCCCACATTATATTGCTGACAAATTCGTCAACCCAAGCGGTACAATACTGCAGCATTTCGACAGTCACTTGGTGGAATCTTTAGTTGTGCCAAAAATCTGTGAGGGCTTGGAGGATTATGTTTGTAGCATCCCATATTCTTCATCGTCTGCTTCACAGTTAGAACATGACCCTCTCGCACAAATTCAGTGTTATCCATCTGGTTTTTATAATAATCCACAGCAAGATCAAACTTTTGCAGTTGCAGCCAATCAAATGGAGTACATTGATGCTATATTGTCACCATTATCAAGCAGCCACTTCGTCACAAGCCCTATTGTTCCTTCTAGCTGGGAGGCTTGA 1044 0.4205 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSSQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSLKKRLLSRGMVPSLATFSDIHHSPGCNGSVESFFPLTANPSVILNSHHHLQPDQLYLPSSSPILQVLDHDDYNANFLHIQTPMPQKPPINSLPCEDQTWSMGYLPLHLSPNQENQITRSSNAATPHYIADKFVNPSGTILQHFDSHLVESLVVPKICEGLEDYVCSIPYSSSSASQLEHDPLAQIQCYPSGFYNNPQQDQTFAVAANQMEYIDAILSPLSSSHFVTSPIVPSSWEA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0410 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi06g0410 347 CDD SANT 69 112 IPR001005 -
Glsi06g0410 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi06g0410 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi06g0410 347 Gene3D - 69 116 - -
Glsi06g0410 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi06g0410 347 PANTHER MYB DOMAIN PROTEIN 55 1 162 - -
Glsi06g0410 347 FunFam Myb transcription factor 69 116 - -
Glsi06g0410 347 CDD SANT 17 61 IPR001005 -
Glsi06g0410 347 FunFam Myb transcription factor 11 67 - -
Glsi06g0410 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi06g0410 347 SMART sant 13 63 IPR001005 -
Glsi06g0410 347 SMART sant 66 114 IPR001005 -
Glsi06g0410 347 Gene3D - 11 67 - -
Glsi06g0410 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi06g0410 347 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0410 Glsi-ChrGlsi06 3533294 3534560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0410 1 118 MYB Transcription Factor Family AT3G13890 94.068 3.35e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g0410 Myb_DNA-binding 1.3e-14 CL0123