Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0401 ATGGCATCGTCTTCTCAGTTTTCTCGAATAAAATATGATGTCTTTATCAGCTTTAGAGGCACAGACATACGCTATGGTTTTCTCAGCCATTTGAAGAAGGAATTGCGGCAGAAGCAAATCGATGCCTATGTAGATGAAAGACTAAAGAGAGGAGATGAAATATCACCAGCACTTCTTGAAGCAATTGAAGAATCACTCATTTCATTGATCATATTTTCAGAGGACTATGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTGAAGATTATTGAGTGCATGCACAGAAACAAACAGATTGTAATTCCTGTTTTCTACAACACAAATCCATCAGATGTTAGGCATCAAAGAGGATCTTATGGAGATGCTTTAGCAGAACATGAAAAAAATTATAAGGAAAAGGTGCAACTTTGGAAATTTGTTTTGAAAGAAGCTGCTAATTTATCTGGATTTCATTCATCAAATTACGGGGATGAAGTTGAGCTTATTGAAGAAATTGCTAAATCTTTGTCGACAAGGTTGAATATTATGTACCAAAGTGACTTAAGAGACCTTGTTGGGATTGATGAAAGAATTGCAGATTTAGAATCATTAATGTGCCAAGGATTAGAAGATGTTCGTGTGATTGGAATTTGGGGTATGGGTGGTATCGGTAAAACAACTATTGCAACCGCAATATTTAACAGATTTTGTTTTGAATATGAAGGATGCTGCTTTTTGGCAAATGTAAGAGAAGAATCAGAGAAACATGGAATCATTTATTTGAAGAATAAAATTCTTTCTATATTGCTAAAGGAAAATGATTTACATATTGGCACACCTAATGGAATACCCCCCTATGTTAGAAGAAGGCTTCTTCGACAAAAAGTTTTTGTAGTTCTTGATGATATCAATGATTCAGATCAACTAGAAAATTTAGTTGGAGCACTTGATTGTTTTGGATCGGGTAGTAGAATCATTATAACAACTAGAGATAAACAAGTGCTCGGTAAAAAGGTCGACAAAATATATGAGGTTAAGCCATTGACCTTCGATGATGCTGCTCAACTTTTTATGTTGAATGCATTTGAGGAAAATTGTGTTGACATTGAATGGATTGAGTTATCAAGAAGAGTGATTGATTATGCTCAAGGCATTCCTTTAGCTCTAAAAGTTTTGGGTTCCTTTCTCTATGGAAAAAGCAAAGAGGAATGGGAAAGCCAACTGGAAAAACTCCAAAAAATGCCTTATGGAAAAATTCAAGATGTATTGAAATTGAGTTATGATAGATTAGATAGGGAAGAGAAGAACATATTTTTGTATATTGCCTGTTTTCTCAAAGGCTATGAATCACACAGGATAATATTTCTACTTGATGCTTGTGGTTTCTCAACCATTATTGGGTTAAGAGTGCTTCGAGACAAATCTCTTATATCTGAAGTAAAAAATTCAGCCTCCAAAAGATCAATGATATCTATGCATGACTTGATACAAGAAATGGGTTGGGAGGTTGTTCGTGAAGAATGTTTTGAAAATCCTGGAAGACGCAGTCGATTATGGAATTCAAATGATATATATCAAGTATTGAAAGATAACAAGGGTACTAAAGCCATTCAAAGCATAACTCTGTACGTGCCAAAAATTCAAGAGTTGTGCTTAGGACCTCAAGTCTTTGCTGAGATGTCTGAGCTAAAATTTCTTAATTTTACGCAACCATACGCAGATGAACAAATCCTGAGTCTTCCTCAAGGCCTCGAAACTTTGCCAAATGGACTAAGATTTCTTCATTGGGTTAGTTACCCTTTAAAATCCTTGCCTTCAACATTCTGTCCAGAAAGCCTTGTGGAACTCAACATGACTCATAGCCACGTGGAAAAGCTCTGGGATGGAGTCCTGCGTCTTGTGAACTTGAGAAAAATTGATCTCAGCAACTCCAAGCATCTACTAAAGCTCCCAGATTTTTCTATGGCAAAAAATCTTGAAGAAGTAGAACTTTCCAACTGCAGAAACTTGCTTGAGGTTCATCCATCTATTTTGTCTCTCCAAAAGCTTGTGAGAGTGAACCTATTTTACTGCAAAGCACTCACCAGTTTAAGAAGTGATGTCCATTTAAGATCCCTTCGTGATCTCTTTCTGGGAGAATGCTCAAGACTCAAGGAATTTTCAGTGACATCAGAGAATTTGAAAAGTTTGCATCTTGCAGGGACTGCTATAATTGAACTACCCTCATCAATGGGGAATCTCAGCAAGCTTGAAACATTCTATCTAGATCGTTGCACAAGACTTAAGCATCTTCCAAACAAGCTGGCTGACTTGAGATCTCTTCGTGAGCTTCGTATTTATGGTTGCACACAACTTGATGCATCAAATCTGCATATCCTACTTGAAAACTCGCGATCTTTAGAAACGCTATTGGTCGAAGAATGTCGTAGGTTGTTTGAGGTTCCAGACAACATAGGCTTCTTATCATCATTGCAAAATTTGTTACTGAAAGGAACTGATATTGAGAGCTTGCCTGCAAGCATCAAGCATCTTCCGCAGCTGGAAAAACTTGACTTGAGTAATTGTAGGAGGCTTCAATCTCTGCCAGAGCTTCCACCATCCATTAAAGAACTTTATGCCACTAACTGCACATCCCTGGAAAGAGTAGTGTTCTCTTCCATGACAGCTAAAGAATTGAAAGAAATGAAAGTACGTACTGGGACCAAATTCCAGAATTGCCTAAAATTGGGTGAAGAATCACTCAAAGCTATTGGAGTAAATTCTCATGTCAACTTAAAGAGATTGGCTTATGAACATTTTTCAACTCTAGAAGGAGGCAAGATCCTCGGTGGTCCGGTTCATGTTATTTACCCAGGCAGCAATGTTCCTGAGTGGTTCAAGAACAGGACAAGACAGTCTTCAGTAACCATTGACCTCTCTTCTGCTCCACATGCCATGTTTGTGGGTTTCATTTTCTGTGTGGTTGTTCGTGAGTTCCCATCAAATGACAAGAACTTTGTTGGATGTGACTGCTACTTGGAAAGTAATGGTGAAAGGGCCACCCAAATGGGTGCATGGTCTAGCATAACTTCCTGTGAATTTATGTCTGATCATGTGTGTCTTTGGTACGATGAACAATGTTGTATGAAAACAGAGGAGTGTACAAATGGAAGCATGAAAGAAGATGACGGCAATGATGAAGGCACCACTTCTAATCTGAAGGTTTCATTTGAGTTCTTTGCCCAAACTGATAATACTTGGGATAAGAAGAAGGACATTGTGATAACAGAGTGTGGAGTCTGCCCCATATATGCCTCAGAATATCACAATTTCATTGAACAAATGGAGTTTGAGTTGGAGTCCCAATCAAGAGCAATTGAAATGGGAGTTGGAAGCTCTGATGAGAAGAAAGATGAGGAAGAAACACTCCCTATAGGACAAAAATCCAATGGATATATCTTTCCACCCCTTCCAATTGGAACTTGGAAGAAAGGAACAGAGGGCTTGAAAGATATCATCAACCTATGA 3486 0.381 MASSSQFSRIKYDVFISFRGTDIRYGFLSHLKKELRQKQIDAYVDERLKRGDEISPALLEAIEESLISLIIFSEDYASSKWCLEELVKIIECMHRNKQIVIPVFYNTNPSDVRHQRGSYGDALAEHEKNYKEKVQLWKFVLKEAANLSGFHSSNYGDEVELIEEIAKSLSTRLNIMYQSDLRDLVGIDERIADLESLMCQGLEDVRVIGIWGMGGIGKTTIATAIFNRFCFEYEGCCFLANVREESEKHGIIYLKNKILSILLKENDLHIGTPNGIPPYVRRRLLRQKVFVVLDDINDSDQLENLVGALDCFGSGSRIIITTRDKQVLGKKVDKIYEVKPLTFDDAAQLFMLNAFEENCVDIEWIELSRRVIDYAQGIPLALKVLGSFLYGKSKEEWESQLEKLQKMPYGKIQDVLKLSYDRLDREEKNIFLYIACFLKGYESHRIIFLLDACGFSTIIGLRVLRDKSLISEVKNSASKRSMISMHDLIQEMGWEVVREECFENPGRRSRLWNSNDIYQVLKDNKGTKAIQSITLYVPKIQELCLGPQVFAEMSELKFLNFTQPYADEQILSLPQGLETLPNGLRFLHWVSYPLKSLPSTFCPESLVELNMTHSHVEKLWDGVLRLVNLRKIDLSNSKHLLKLPDFSMAKNLEEVELSNCRNLLEVHPSILSLQKLVRVNLFYCKALTSLRSDVHLRSLRDLFLGECSRLKEFSVTSENLKSLHLAGTAIIELPSSMGNLSKLETFYLDRCTRLKHLPNKLADLRSLRELRIYGCTQLDASNLHILLENSRSLETLLVEECRRLFEVPDNIGFLSSLQNLLLKGTDIESLPASIKHLPQLEKLDLSNCRRLQSLPELPPSIKELYATNCTSLERVVFSSMTAKELKEMKVRTGTKFQNCLKLGEESLKAIGVNSHVNLKRLAYEHFSTLEGGKILGGPVHVIYPGSNVPEWFKNRTRQSSVTIDLSSAPHAMFVGFIFCVVVREFPSNDKNFVGCDCYLESNGERATQMGAWSSITSCEFMSDHVCLWYDEQCCMKTEECTNGSMKEDDGNDEGTTSNLKVSFEFFAQTDNTWDKKKDIVITECGVCPIYASEYHNFIEQMEFELESQSRAIEMGVGSSDEKKDEEETLPIGQKSNGYIFPPLPIGTWKKGTEGLKDIINL 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0401 1161 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 150 IPR035897 -
Glsi06g0401 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 434 IPR027417 -
Glsi06g0401 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 760 IPR044974 GO:0006952
Glsi06g0401 1161 Pfam C-JID domain 943 1093 IPR045344 -
Glsi06g0401 1161 Gene3D - 6 175 IPR035897 -
Glsi06g0401 1161 Gene3D - 176 337 IPR027417 -
Glsi06g0401 1161 SMART till_3 11 147 IPR000157 GO:0007165
Glsi06g0401 1161 Gene3D Ribonuclease Inhibitor 718 915 IPR032675 -
Glsi06g0401 1161 Gene3D Ribonuclease Inhibitor 471 717 IPR032675 -
Glsi06g0401 1161 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 175 - -
Glsi06g0401 1161 Pfam TIR domain 11 186 IPR000157 GO:0007165
Glsi06g0401 1161 Gene3D - 341 424 IPR042197 -
Glsi06g0401 1161 ProSiteProfiles TIR domain profile. 10 173 IPR000157 GO:0007165
Glsi06g0401 1161 Pfam NB-ARC domain 203 421 IPR002182 GO:0043531
Glsi06g0401 1161 SUPERFAMILY L domain-like 485 879 - -
Glsi06g0401 1161 Pfam Leucine Rich Repeat 606 623 IPR011713 -
Glsi06g0401 1161 PRINTS Disease resistance protein signature 835 851 - -
Glsi06g0401 1161 PRINTS Disease resistance protein signature 207 222 - -
Glsi06g0401 1161 PRINTS Disease resistance protein signature 283 297 - -
Glsi06g0401 1161 PRINTS Disease resistance protein signature 375 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0401 Glsi-ChrGlsi06 3438743 3443084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0401 6 850 WRKY Transcription Factor Family AT4G12020 34.266 2.17e-123 416