Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0392 ATGGATTATTATTCCCAAGGGACGCAATTGGAAGCTTACCCTGTCACCTACAATGGCGATGAATTTCGTGAAGAAATTGCTCGAGAACAAGAGGGATTCTATTCGGGGCATGATTTTGATCCAAACAATAATAGTGCGGGTTTTAAGATAAAACCCTCAGTCAATCGTCGTGACTTGTCATCAGGTAGTAAACTCTTCGTTGGAGGCATATCCTGGGAGACTACCGAAGATTCGTTTTTTAAATACTTCAACAAATATGGAGAAATATTAGATTCTGTTATTATGATGAATAAACATTCTGGAAGGCCACGAGGGTTTGGCTTTGTAACGTTTGCTGATTTAACCGTAGTGGATAAAGTTTTGGCACAGGAACATACCATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTTCCTAGGGAGGACATGGAAGTTGTAGGAGAATTGAAAACAAAGAAGATTTTTGTTGGTGGAATACCCCAAATTTTCACTGATGATGAGCTGAAGGAATACTTTTTACCTTATGGTAGTATTGTTGAGCATCAAATTATGCTAGATCATAAGACTGGGCGATCTAGAGGCTTTGGGTTTGTCACTTTTGACAGTGAAGATTCAGTTGAAAAGGTTTTTGCAGTGGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAACCCAAAAGAGCTGGAGTTGATTACAGCAGCAGTTCACGAAAGTCATATGGTGGTTTTGGCAGTGGGACGGATGGATTGGGTGGGCATAGTTCTAGAGGTCGTAATGATGGAAGAAGGGGTAGGCCATATGCAAACCTTGACAAGAATGGGGCATATGGCTATTTTGAGGGGAGCTATGTTGGAATCACTGGCACCCCTTCTTACGTTGGTTATGGTGGATATGGTTATGGATTTGGGTATGGTGGACCAATGTATTGCTTTGGTGGTTATGGGGTTAATTCTTATGGTAATCCTGGTGTTTATGGTGGCATTGCTGTGTATGGAGATGGTAAAGCATATGAAAGAGCTGGTGGTTACAATCGCACCAGTGGCTATGACAGTGCCACTGGCAAAGTGGTCGAGAAGGATGATGGTACTAGTGAAAGATATCATCCTTACTGGAAATGA 1134 0.4189 MDYYSQGTQLEAYPVTYNGDEFREEIAREQEGFYSGHDFDPNNNSAGFKIKPSVNRRDLSSGSKLFVGGISWETTEDSFFKYFNKYGEILDSVIMMNKHSGRPRGFGFVTFADLTVVDKVLAQEHTIDGRVVEVKRTVPREDMEVVGELKTKKIFVGGIPQIFTDDELKEYFLPYGSIVEHQIMLDHKTGRSRGFGFVTFDSEDSVEKVFAVGKIHELGGKQVEIKRAEPKRAGVDYSSSSRKSYGGFGSGTDGLGGHSSRGRNDGRRGRPYANLDKNGAYGYFEGSYVGITGTPSYVGYGGYGYGFGYGGPMYCFGGYGVNSYGNPGVYGGIAVYGDGKAYERAGGYNRTSGYDSATGKVVEKDDGTSERYHPYWK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0392 377 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 144 274 - -
Glsi06g0392 377 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Glsi06g0392 377 Gene3D - 146 274 IPR012677 -
Glsi06g0392 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 139 IPR000504 GO:0003723
Glsi06g0392 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 43 376 - -
Glsi06g0392 377 SMART rrm1_1 153 226 IPR000504 GO:0003723
Glsi06g0392 377 SMART rrm1_1 64 135 IPR000504 GO:0003723
Glsi06g0392 377 MobiDBLite consensus disorder prediction 356 377 - -
Glsi06g0392 377 MobiDBLite consensus disorder prediction 359 377 - -
Glsi06g0392 377 SUPERFAMILY RNA-binding domain, RBD 150 257 IPR035979 GO:0003676
Glsi06g0392 377 Gene3D - 62 144 IPR012677 -
Glsi06g0392 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Glsi06g0392 377 MobiDBLite consensus disorder prediction 231 271 - -
Glsi06g0392 377 FunFam Heterogeneous nuclear ribonucleoprotein 1 62 143 - -
Glsi06g0392 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 132 IPR000504 GO:0003723
Glsi06g0392 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 222 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0392 Glsi-ChrGlsi06 3241744 3244603 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0392 59 227 Eukaryotic Initiation Factors Gene Family AT1G71770 27.513 2.16e-10 60.5