LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0386	ATGTTAAAGGGTTTGATGTTTCACCAGCAACAGCAACAAGTAGTGGAGGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAGGCCAGTGTTTCCTCAGGCAACAGAACCGAAACTGGTACCAATTATCCTTCTCAACAATACTTTGCTCCACCACCAACTCAAACTCAGCCTGTGAAGAAAAAGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAAGTTATCGCCTTGTCCCCCAAGTCTCTTCTGGCAACCAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTTCAACTTCACAAAAGAGGGCACAATTTGCCATGGAAACTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTATGCCCAGAACCTACCTGTGTGCACCATGACCCATCAAGGGCCCTTGGGGATCTAACTGGTATCAAGAAGCACTTCTGCAGAAAGCATGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAGGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACCCACAGAGCCTTTTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCTGTACCAGGCACTGCAAACCCATTTCTTTCTTCTCAACCTGGCTCTTCATCATCTCACATAAATCTGGAAACCCAATTTAATCCCCAAGATCTCCATGCTTACCCATTGAAAAAAGAGCAGCAAAATTTCGGTCTAAGGCCAGAAGTACCCCCTTGGCTTTCCTGCCCTGGCCCACCCACTGTTGATCTCTCCTCAGCATCATCAATCTTTTCCACAAGATTAGATCAAGAATTTTCACAAGCACAACACAGGCAAGATCTAAGCCTCCATGAAAACCCAAGCCCTAACCCTAGCCTTGGTCCCACTCTTCCTGCCTACCAACCAGCGCCTTCTCCGCACATGTCAGCTACAGCGTTGCTGCAGAAAGCAGCTCAAATGGGTGCAACCATGAGCAAAACTGGCTCCTCACCAGCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGCTGATGATTCTGGCAACAATTCAAGCGGTAATTTTGGTTTGAATTTGTCATCACGTGAAGATATTCAGATGACCAGTACTACTACTGGGTTTGGTCATGGCTTCTTGGCTCCTTTCGAGAATAAAGCTGCATTCCCTTCTGCTTCCTCTGCAGCAACCACAGGAGTCGGTAGTACTGCTGCTTCCTCAGGTGTTCCTCACCCATACCTTCTTCACGATGTTATGAATTCTTTCTCTGGTACTTCTGGGTTTGAAGGAACTTCTTTTGAGGATGCTTTTGGGGGGATTTTGAATTCAAAGAAAGATGTTAACTTTCATGACACCCTTTCGAAAATAACCACCGCCAGCCATCTTAGTGGCGCCGCCGATGAAGGGGGCAGTGGCGGTGGGGGGAATGAAGGTTTGACAAGGGATTTCTTGGGTCTTAGACCTCTCTCTCGTACTGATATTCTCAGCATTGCTGGAATTGGAAACTGCATGAATTCCTCCCATGATCAACAGAATCAGTCCAAAAAGCCATGGCAAGGTTAG	1650	0.4673	MLKGLMFHQQQQQVVEENMSNLTSASGEASVSSGNRTETGTNYPSQQYFAPPPTQTQPVKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVPGTANPFLSSQPGSSSSHINLETQFNPQDLHAYPLKKEQQNFGLRPEVPPWLSCPGPPTVDLSSASSIFSTRLDQEFSQAQHRQDLSLHENPSPNPSLGPTLPAYQPAPSPHMSATALLQKAAQMGATMSKTGSSPAMIRTHQQAHVSAADDSGNNSSGNFGLNLSSREDIQMTSTTTGFGHGFLAPFENKAAFPSASSAATTGVGSTAASSGVPHPYLLHDVMNSFSGTSGFEGTSFEDAFGGILNSKKDVNFHDTLSKITTASHLSGAADEGGSGGGGNEGLTRDFLGLRPLSRTDILSIAGIGNCMNSSHDQQNQSKKPWQG	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	226	245	-	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	21	62	-	-
	Glsi06g0386	549	Pfam	Zinc-finger double-stranded RNA-binding	89	111	IPR022755	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	300	388	-	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	300	319	-	-
	Glsi06g0386	549	Gene3D	Classic Zinc Finger	70	136	-	-
	Glsi06g0386	549	SMART	c2h2final6	89	111	IPR013087	-
	Glsi06g0386	549	SMART	c2h2final6	130	160	IPR013087	-
	Glsi06g0386	549	SMART	c2h2final6	165	185	IPR013087	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	227	245	-	-
	Glsi06g0386	549	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	33	533	IPR031140	-
	Glsi06g0386	549	Gene3D	Classic Zinc Finger	143	222	-	-
	Glsi06g0386	549	FunFam	protein indeterminate-domain 5, chloroplastic-like	143	222	-	-
	Glsi06g0386	549	SUPERFAMILY	beta-beta-alpha zinc fingers	88	185	IPR036236	-
	Glsi06g0386	549	ProSitePatterns	Zinc finger C2H2 type domain signature.	91	111	IPR013087	-
	Glsi06g0386	549	FunFam	protein indeterminate-domain 12-like	68	136	-	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	345	388	-	-
	Glsi06g0386	549	ProSiteProfiles	Zinc finger C2H2 type domain profile.	89	111	IPR013087	-
	Glsi06g0386	549	MobiDBLite	consensus disorder prediction	21	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0386	Glsi-ChrGlsi06	3194470	3196704	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0386	1	356	IDZ Gene Family	AT1G55110	60.160	1.68e-132	392

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi06g0386		zf-C2H2_jaz	5.7e-05	CL0361