LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0375	ATGGGGCTGGGGCTGATTTTCCTGCTGATTAAGCTACATTTAGTTATCAGTGCTCCACAACTTCATAAATATACAGCCACCAGTCTGCACCATTCCAGAAGTCATTCAAGTATTGCACTCCCACCATCCCATTCATCTTCTAGAGTTCCTGCAAGTATGGCACTTCCACCTTCTAAGTCATTCTCTCAAGCTCATACAAAGAAATGGAGGCACAAATCTGTAGATTCTCCAATATCACATCATAAGCATCCCATTTTCAGAAGAAAGTCCAGCCACCCCACACTGGGGCCAACTTACCCTATTTATTCACCTACTTACAATCATCGAGGTCCTTCAGTTTTCCAATCACAGCCTCCTGTCTCTTCACCAATGAGCTGGGAATTGCCTGCAGTTGCACCATCACCAGCAGTTCTCCCAGGCCACTTGAATGTGCCTTCTCCTTCGCCTGGAGTTTCACCTCTTGGTTCATCATCGAAGAAGATGAAAACTCCATCAGCATCACCTGTTTTGGCTTTGCCACCTCCATCTCCTAATAAGGATTGCATGTCAGTGACTTGCTCAGAGCCCTTTACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTTCGCCTCAGCATTGCAATATACAAGTTTTTTTCTCTGATTTCAGAGCTAGCTGAGGAAATTTCAGCCTGTGTTTTGCTGAACCATAGCCAAGTTCGCATTGTGGGAGCTGATGCAACTAATCACCAACACGAGAAAATCACCGTTCTCATAAACTTGGTACCCAAAGGAGTAAAATTTGATGATGCAACTGCATTTTTAATATATAAGAAATTCTGGCACAGGGAGATTCTGACAGATGCTTCCCTTTTTGGTTCCTATGAAGTGCTCTATGTTCATTATCCAGGTCTACCACCATCTCCACCTTCAACTGCCTCAAGCGCTTCTAGTATGGATGATGGACCATTCCCTGGTTATGACAACAATGGAACATTAATGAAACCTTTAGGAGTAGATGTGCCAATGAAGAAAAAACAAGGGAATGGTGGAAGCGTGATTATAATAATTGTATTGTCATCTTTTACTGTTTCTGTTCTATTCATTGGAGCTGCCTGGCTTTATCTGGTGAAATGTGGCTCTTACTTTCAAGAGCCTGACCATATCCTGGATGCTTCAATCCCTTCTTTTTCAAAACCATCAGGGGCTACTAGGTCATTAACTTATGGGAGCATGCCAGGTTCTGGATCAATGTCCTTCGGCTCTGGAACAATGATATATACCGGATCTGCTAGGACTTTCACTTTGGATGACATAGAGAAAGCAACAAATAACTATGATTCTTCAAGAATAATAGGAGAAGGAGGCTTTGGGCTTGTCTATAAAGGCATTCTATATGATGGGAGGGATGTGGCTGTGAAGATTCTCAAAAGATATGATCAGCATGGCGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGACTGCATCACAGAAATCTAGTTAAATTGATAGGCATATGCATGGAGACCCAGACTCGCTGCTTAGTCTATGAGCTTGTCCCTAATGGAAGTGTGGAATGCCACTTGCATGGTGCTGACAAGAAAACTAATCCACTTAATTGGAATGCCAGGATGAAGATTGCGCTTGGTACAGCCCGGGGATTGGCATATCTGCATGAAGATTCAAATCCATGTGTCATACATCGTGACTTCAAGTCTAGCAATATCTTGTTGGAATATGATTTTACACCCAAGGTTGCAGATTTTGGATTGGCTAGAACAGCACTGGACGAGGGAAACAAGCACATCTCCACACATGTTATGGGAACGTTTGGCTACCTAGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTGAAAAGTGATGTTTACAGCTATGGAGTTGTACTCATTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTGTCACAACCACCTGGACAAGAAAACCTTGTTACATGGGTTCGTCCACTACTCACAAGCAAGGAGGGCTTACAGACAATCATAGACCCAGTTATAGAGCTCAATATTTCTTTTGAAACTGTGGTAAAAGTTGCAGCAATCGCATCAATGTGCGTGCAACCAGAAGTCTCTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCCTTAAAGCTGGTTTGCAGTGAGTTTGACGAAACAAGCATTACAAGATCAAGAAGCTTCCACGAAGAGGTTATTCTTCTAACGGATGGAGATGAAAAACTTTCAAGTTTTTCAGGTGACATAATGGATTTTCAAGAGTTTCTCAAACCTCAATCTAGTCATGATAAGGTAGCATTAACAGCATCAAAGCTGTTCCGTACATCAGACCAGGAATTTGAGTCCTTCAGAAGGCATTCTACTTCAGAGCCTCTTACTACAGGAAAGAAAAGACAGTTCTGGCAGAAATTAAGAAGTTTATCTGGAGGGAGCATTAGTGAGCATGGATTTGCAGCTAAACTATGGCCTGGATCCCATTAA	2508	0.4282	MGLGLIFLLIKLHLVISAPQLHKYTATSLHHSRSHSSIALPPSHSSSRVPASMALPPSKSFSQAHTKKWRHKSVDSPISHHKHPIFRRKSSHPTLGPTYPIYSPTYNHRGPSVFQSQPPVSSPMSWELPAVAPSPAVLPGHLNVPSPSPGVSPLGSSSKKMKTPSASPVLALPPPSPNKDCMSVTCSEPFTYTPPGSPCGCVWPLQVKLRLSIAIYKFFSLISELAEEISACVLLNHSQVRIVGADATNHQHEKITVLINLVPKGVKFDDATAFLIYKKFWHREILTDASLFGSYEVLYVHYPGLPPSPPSTASSASSMDDGPFPGYDNNGTLMKPLGVDVPMKKKQGNGGSVIIIIVLSSFTVSVLFIGAAWLYLVKCGSYFQEPDHILDASIPSFSKPSGATRSLTYGSMPGSGSMSFGSGTMIYTGSARTFTLDDIEKATNNYDSSRIIGEGGFGLVYKGILYDGRDVAVKILKRYDQHGGREFLAEVEMLSRLHHRNLVKLIGICMETQTRCLVYELVPNGSVECHLHGADKKTNPLNWNARMKIALGTARGLAYLHEDSNPCVIHRDFKSSNILLEYDFTPKVADFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLIELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQTIIDPVIELNISFETVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFDETSITRSRSFHEEVILLTDGDEKLSSFSGDIMDFQEFLKPQSSHDKVALTASKLFRTSDQEFESFRRHSTSEPLTTGKKRQFWQKLRSLSGGSISEHGFAAKLWPGSH	835

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0375	835	Gene3D	Phosphorylase Kinase; domain 1	421	521	-	-
	Glsi06g0375	835	PANTHER	OS01G0750732 PROTEIN	173	737	-	-
	Glsi06g0375	835	MobiDBLite	consensus disorder prediction	147	172	-	-
	Glsi06g0375	835	ProSiteProfiles	Protein kinase domain profile.	446	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0375	835	MobiDBLite	consensus disorder prediction	35	63	-	-
	Glsi06g0375	835	MobiDBLite	consensus disorder prediction	35	101	-	-
	Glsi06g0375	835	Pfam	Protein tyrosine and serine/threonine kinase	450	719	IPR001245	GO:0004672\|GO:0006468
	Glsi06g0375	835	Gene3D	Transferase(Phosphotransferase) domain 1	522	741	-	-
	Glsi06g0375	835	SUPERFAMILY	Protein kinase-like (PK-like)	425	719	IPR011009	-
	Glsi06g0375	835	ProSitePatterns	Protein kinases ATP-binding region signature.	452	474	IPR017441	GO:0005524
	Glsi06g0375	835	CDD	STKc_IRAK	452	720	-	-
	Glsi06g0375	835	MobiDBLite	consensus disorder prediction	149	164	-	-
	Glsi06g0375	835	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	568	580	IPR008271	GO:0004672\|GO:0006468
	Glsi06g0375	835	FunFam	receptor-like serine/threonine-protein kinase ALE2	419	521	-	-
	Glsi06g0375	835	FunFam	Receptor-like serine/threonine-protein kinase ALE2	522	738	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0375	Glsi-ChrGlsi06	3072749	3077877	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0375	178	825	Receptor kinase-like Gene Family	AT5G56890	59.002	0.0	754

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_Extensin	Glsi06g0375		PK_Tyr_Ser-Thr	4.4e-47	CL0016