Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0368 ATGAGCCGCTACGACAGTCGCTCTGCCGACCCTTCTTCCTACCGTGACCGGAGGAGTGATTCGGGGCTAGGTGCACCTAGAGGGTATGGTGGTTCAGTCCACTCTTCATCAAGCAGAAGGGATTACAATGATGGTGGGTCTCCAAGGAAATTGAATTTGGATGGCCTGCCCCATTTTGAGAAGAACTTCTATAATGAATCACCAGAGGTGAGGACAATGACTGAGGCTGAGGTTAATGAGTATCGGTTGCTGAGGGAGATAACTGTTGAAGGCCGAGATGTCCCAAAACCTGTCAAGAGCTTTCACCATGTTGGTTTCCCAGAATATGTTATGCAAGAAATTGCAAAAGCTGGCTTTGTTGAACCTACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGACCTTATAGGAATTGCAGAAACCGGATCAGGGAAGACACTTGCTTATTTGTTGCCTGCAATTGTACATGTCAATGCCCAGCCCATTCTAGACCCTGGAGATGGACCAATTGTGCTAGTCTTGGCCCCAACTCGTGAACTTGCTGTGCAAATACAACAAGAGGCTACTAAGTTTGGCGCATCATCGAAGATTAAGAGTACATGCATATATGGTGGGGTACCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGCTTGAGTCAAATCATACTAACTTACGGAGGGTTACATACCTTGTATTGGATGAGGCCGATAGGATGTTGGACATGGGATTTGAACCCCAGCTAAAGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTATACTGGAGTGCTACCTGGCCGAAGGAGGTAGAGCAGCTGGCAAGGCAGTCCCTTTATAACCCATACAAAGTGATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTAATATTCATGGATACCAAGAAAGGATGTGATCAGATCACTCGGCAGCTCCGCATGGATGGTTGGCCTGCACTGTCAATTCATGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGATGTATGTGATAAATTACGACTTCCCGGGATCTCTGGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATATACATTTTTTACTGCTGCTAATGCCAGGTTTGCAAAGGAGCTTATAACCATACTCGAGGAAGCTGGACAGAAAGTTAGTCCCGAATTGGCAGCAATGGGACGTGGTGCACCTCCTCCTCCAACAGGTTATGGAGGTTTCCGAGGGAGAGGCTATAGCAGTGGTCGCCCACGGAGCTGA 1512 0.4649 MSRYDSRSADPSSYRDRRSDSGLGAPRGYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYNESPEVRTMTEAEVNEYRLLREITVEGRDVPKPVKSFHHVGFPEYVMQEIAKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLKKIVSQIRPDRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPPPTGYGGFRGRGYSSGRPRS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0368 503 Gene3D - 61 308 IPR027417 -
Glsi06g0368 503 Gene3D - 309 479 IPR027417 -
Glsi06g0368 503 MobiDBLite consensus disorder prediction 1 54 - -
Glsi06g0368 503 MobiDBLite consensus disorder prediction 1 22 - -
Glsi06g0368 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Glsi06g0368 503 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Glsi06g0368 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Glsi06g0368 503 SMART ultradead3 118 321 IPR014001 -
Glsi06g0368 503 CDD SF2_C_DEAD 318 448 - -
Glsi06g0368 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 72 477 - -
Glsi06g0368 503 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Glsi06g0368 503 MobiDBLite consensus disorder prediction 474 503 - -
Glsi06g0368 503 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Glsi06g0368 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Glsi06g0368 503 SMART helicmild6 358 439 IPR001650 -
Glsi06g0368 503 CDD DEADc_DDX5_DDX17 110 305 - -
Glsi06g0368 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Glsi06g0368 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Glsi06g0368 503 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0368 Glsi-ChrGlsi06 3002096 3007164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0368 86 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 1.31e-75 242