Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0361 ATGGCTCAGCAGCCGTACGAATACGATCCTTATTACCTCCACCAACAAGATGACCGGAGCAACATCAACACACTCTTCGTATCGGGCCTCCCAGACGACGTAAAGGCCCGTGAGATTCATAACCTCTTCCGCCGTCGTCCCGGCTTCGACTCTTGTCAGCTCAAGTATACTGGCCGCGGCAACCAGGTTGTTGCATTTGCTACCTTTTTCAATCATCAATCCGCAATGGCGGCATTGCATGCATTAAATGGTGTCAAATTTGATCCTCAAGCTGGATCTGTTCTACATATTGAGCTTGCCAGGTCAAACTCAAGGAGAAAGCGTAAACCAGGTGGTGGAGTCTATGTTGTTATAGATAAAAGATCTAAAGGGGAGGCCGATGCTCAGGGTTCATCAAGCGATGATGGTGACAGTGAATCTGAAGTACCATTTGGGAATGACAGCAACCATGGAGGTTTAAAGAGCGGTGAGACTGCAGTTAGTTCTGACGATGCTGCAGCTGTCAATGAGCAGCATGAAAAGGGTGCTGATGGAGGACCATGTTCCACTCTCTTCATTGCAAATCTAGGTCCAAACTGTACCGAAGTTGAACTGAAGCAAGCCTTTTCTGTGTATACTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCAGTTGCCTTTGCTGATTTTGAGGAAATTGATCAAGCCACTAAGGTCTTGGAGGAACTACAGGGCAACTTGTTGTCATCATCAGATCGGGGTGGCATGCACATAGAGTATCTTCTTCTAATCCTATGTGTTCACCCAGTTTTTATTCCGCTTTTTTTTAGATTTTATATCTTTCTAACTCCCCCCACCCCCTCCTCCCTTTTGCTGTCCAGATATGCAAGGTCTAAAATGAGGAGGCGTTAG 900 0.4633 MAQQPYEYDPYYLHQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGGGVYVVIDKRSKGEADAQGSSSDDGDSESEVPFGNDSNHGGLKSGETAVSSDDAAAVNEQHEKGADGGPCSTLFIANLGPNCTEVELKQAFSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGNLLSSSDRGGMHIEYLLLILCVHPVFIPLFFRFYIFLTPPTPSSLLLSRYARSKMRRR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0361 299 FunFam RNA-binding protein with multiple splicing 2 20 110 - -
Glsi06g0361 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 249 IPR000504 GO:0003723
Glsi06g0361 299 MobiDBLite consensus disorder prediction 103 176 - -
Glsi06g0361 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 244 IPR000504 GO:0003723
Glsi06g0361 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 88 IPR000504 GO:0003723
Glsi06g0361 299 Gene3D - 171 257 IPR012677 -
Glsi06g0361 299 SUPERFAMILY RNA-binding domain, RBD 23 244 IPR035979 GO:0003676
Glsi06g0361 299 Gene3D - 18 105 IPR012677 -
Glsi06g0361 299 MobiDBLite consensus disorder prediction 131 156 - -
Glsi06g0361 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 102 IPR000504 GO:0003723
Glsi06g0361 299 SMART rrm1_1 24 98 IPR000504 GO:0003723
Glsi06g0361 299 SMART rrm1_1 183 255 IPR000504 GO:0003723
Glsi06g0361 299 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 141 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0361 Glsi-ChrGlsi06 2961070 2966211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0361 19 246 Eukaryotic Initiation Factors Gene Family AT4G34110 23.420 5.10e-06 45.8