Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0336 ATGAGTAGCGAAATAAGGTCAGGTCAGAATGCAGAAGTAAAAGTGAGAGGAAAGATAAAGCTGAAGAAGATATATGCAGCAGTTTTCACACACAGGGAAACGTCAACAAAAAGTGACCCTACCATGTTGGAGAAACACATTCAAATAGTACTATTGGAGAAGGAAGAGCCACCGAGTACCATAGCACTGTTTGGGGATACTTTGGAGGCAGTGACTTGGTCTCTCACATCACATGCGCTGTTTGGTTTTCGCGATGCGAAGGGCAAGGCAAGGATTAAACTATCAGTTCCAGAAGATAAGGTGATTGAGTGTGACAACCTTATTTCCATGCATCCTCTATCGCTAACATGGAAGAGAGGTGACGAGTCTGTGCAATGTTCATTCATCTTCGGTTCTTCTGCTGACATTAAAGGCTCAGATAAGTATTCTCAGTTTTGGAAGCAGCTGGATCTAGAACAGTCATCTATGGAAGGTGATCTTAGCTGGGAAGCGACGCAAATTTTGGCCAACATGCCTATCTTGTGGAGCACTACTCACCAACAAGACCTCGCAGAAGCAGGCCACTCCATGCCCAGATTAAATTCAAGTGTTCTTAATCAAATGCAAGAGACCCAGAAGGGTCAAACAGATAATCTGTATTCAAATTCTGAGAAAGTGAGTGACAAGTTTGGTGGTGGAACCAATTGGGGAGAAGCTTTAACGTCCCAATCATGCCCATCCCTTTCAGTCAATGAGCCTTACAGTGTGAACCCAGTTTGCAATTTTGTGCCAGATTTCAGTATGGCCCACCAGCAACGCCTCATCAATGGAGCTTCACAGAATGGCAAGGCTACCTGCTCTGATATTGAGTCACTAGACTGCTTGCTCTCAGCTACACACAGCAACACAGACACTTCCGTGGACGATGATGGGATTTCCATGATTTTATCTGACTGTAGAAGCTTATGGAACTTCAGTTATGGCTGCAGTGCAGTTTCCTCTGGCGAATCTGAGAGTAATGCTGGCAGAAACAAAGACATGCAGTATCCTGTGAATGAACTTGATGAGACAGTGTCTCAGAGTTCCTCTGATCTATATGTCAATCAAGGCAAAGTTGTAGAATCTAAGGCTAATTGTGCAAAAAGGAGAAATGACCAATCTGAGCTGATCAAAGTTGATGCAAGTGATTCCTACTTTAGTATTGTTCAGAGTACATCGGCTTCTGAAGGCGGTTTCAGGCTCATCTCAGAGAATCCACCAAAATCCAAGAAACCCAAATGTGATAATCGTCCAGGCTCATCCAATATCAATTTTCAGCAGCCAAATTCATCTGTGTCATCTTCCATTAATGAACAAGAACCTGACCCAGAGGCCATAGCACACATGAAGGAGATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTAGGCTTGGAGATGGTGGAAAAGCCGAAAAGGAAGAATGTCAGAATATCAACAGATCCACAAACTGTGGCTGCCAGGCAAAGGAGGGAAAGAATAAGCGAGAGAATTAGGGTTTTGCAGAAGCTAGTTCCTGGTGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTGAGGTCTCAGATCAAAGCACTAGAAAGTCTAGGAAACAAGCTTGATTCTATCAACTGTCAACCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACCCATTATTCCCCCATCCAAAACCCTAGCCACATCCAGCTTTCCCCCAGTTGA 1761 0.4407 MSSEIRSGQNAEVKVRGKIKLKKIYAAVFTHRETSTKSDPTMLEKHIQIVLLEKEEPPSTIALFGDTLEAVTWSLTSHALFGFRDAKGKARIKLSVPEDKVIECDNLISMHPLSLTWKRGDESVQCSFIFGSSADIKGSDKYSQFWKQLDLEQSSMEGDLSWEATQILANMPILWSTTHQQDLAEAGHSMPRLNSSVLNQMQETQKGQTDNLYSNSEKVSDKFGGGTNWGEALTSQSCPSLSVNEPYSVNPVCNFVPDFSMAHQQRLINGASQNGKATCSDIESLDCLLSATHSNTDTSVDDDGISMILSDCRSLWNFSYGCSAVSSGESESNAGRNKDMQYPVNELDETVSQSSSDLYVNQGKVVESKANCAKRRNDQSELIKVDASDSYFSIVQSTSASEGGFRLISENPPKSKKPKCDNRPGSSNINFQQPNSSVSSSINEQEPDPEAIAHMKEMIYRAAAFRPVNLGLEMVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQIKALESLGNKLDSINCQPTSIAFSFNPSFPMQTHYSPIQNPSHIQLSPS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0336 586 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 490 548 IPR036638 GO:0046983
Glsi06g0336 586 Gene3D - 490 554 IPR036638 GO:0046983
Glsi06g0336 586 MobiDBLite consensus disorder prediction 422 446 - -
Glsi06g0336 586 Coils Coil 524 544 - -
Glsi06g0336 586 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Glsi06g0336 586 MobiDBLite consensus disorder prediction 404 446 - -
Glsi06g0336 586 Pfam Helix-loop-helix DNA-binding domain 495 534 IPR011598 GO:0046983
Glsi06g0336 586 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 292 580 IPR045843 GO:0003700|GO:0006355
Glsi06g0336 586 SMART finulus 491 540 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0336 Glsi-ChrGlsi06 2779378 2787971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0336 218 582 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.230 6.26e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g0336 HLH 1.4e-05 No_clan