Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0328 ATGAAGAATAATGCACCAAAACGGATGCTGCATTTACTTGCTTTCTTCATTGCTCTTGCCAACTCAAGGTTTGTAGCTTCAGATACCAATGAACCAGCTCATAGGAAGCTTGCTGGTGCTGATTCAGGTTACATAAGCATTGATTGTGGGATAAACGAGGCTTACACTGACAGTGAGAGCAACATTTGTTCACTCCCACAAGATGTCATGACACGGTCTAACCTTGGCATGTCTGAAGATGCCATGTTCATCAGATATGAGGATGATATAGTGCTACACCAACCTAACTCGGCAACTTATCAAGACGATGTTGATGCTATGTGGAGCATCAAACGCGTTTATGAGATCCCCAGAATAAATTGGCAAGGAGACCCATGCGTTCCAACTACTTTTACTTGGGAAGGTCTCACTTGCAGCTCTGACAACATTCCAAGGGTCCTTTCACTGAATTTGAGTTCAAGGAGATTAACAGGGGAGATAGATGCTTCATTTTTCAGACTCACAAAACTAGAGTCCTTGGATTTATCAAACAACAAACTGACAGGAGGAGTGCCTGAGTTTTTTGCAGAGTTGCCAAATTTGAAATTACTTAATTTGACAGGGAATAAGCTCACGGGTCCAATTCCCAAAGCATTGAAGGAAAAGTCCAATACCACTTTCGTATTGAGTTTGGAAGGAAATGCAGGTCTCTGTCTGACAGGAACATGTGAAACAAAGAAGTCTGTTATCCCAATTATTGCATCTATAGCAGCATCCATAGCAGTTTTGGTAATGATTGCCCTCATTTCTGTGATGATCTGGAGAATCAAAAGGAAGAAACAAGGAGCAACAAAGAAAGATGGACAGGAGAAATCAAAAAATATAGTATTTGCTTACAGTGAGGTTATCGGAATTACCAATAACTTCAAAACTGTAATAGGAAAAGGAGGATTTGGAGAAGTTTACCTTGGTACTCTTCAAGATGGAAGAGAAGTTGCAGTCAAGTTACTTTCTCAAACATCAAAGCAAGGATATAGGGAATTTCAATCAGAGGCAAATTTGTTGACGATTGTTCACCATAGAAACTTGGTTTCTCTTGTTGGGTACTGTGATGAAGGTGATGTCAAAGCTCTGGTTTATGAATATATGAATAAGGGGAATCTGCAACAGCAGCTGTCAGATAAAAACCCAAATGTTTTGAAGTGGTCTGAGAGACTTCAAATTGCATATGATGCAGCACATGGATTGGACTATCTGCATAATGGTTGTAAACCGCCCATAGTTCACAGAGACATGAAAACTTCCAACATTTTGCTGAATGGAAGCATGCAAGCCAAGATTTCTGACTTTGGACTGTCTAGAGCTTTCGCTAATGACATTGACACTCATGTATCAACTACACCAGCTGGCACACTGGGTTACCTTGATCCTGAGTTTTATAGCTCTGGAAACCTAAACAAGAAGAGTGATGTTTATAGCTTTGGGATAATTCTGCTTGAGATAATCACCGGCCAGCCAGCAATAAGAGCAGCTACAGCTGGGAGCGTCAGTCATATACTTCATTGGGTTAATCCTAGACTTGAAAATGGAGATATTGGATCCATAGTTGATCCAAGGTTAGAAGGAAAATATAATAGTAATTCAGCATGGAAATTTGTAGAGATCGCCATGTCTTGCATTCCACCAACTGCAATCCAAAGACCTGATATAAGTCACGTAGTAACTGAGCTCAAGGAATGTTTGGCTTTGGAAAAGGCCATTGAAAGAACAGAGAGCAGCAGGAGAAAATCAAGCAATTCATTGGATATGAGTTCTTTGCAGCTTGAATCAATAAGAGGCCCATATGCTAGATAG 1833 0.4037 MKNNAPKRMLHLLAFFIALANSRFVASDTNEPAHRKLAGADSGYISIDCGINEAYTDSESNICSLPQDVMTRSNLGMSEDAMFIRYEDDIVLHQPNSATYQDDVDAMWSIKRVYEIPRINWQGDPCVPTTFTWEGLTCSSDNIPRVLSLNLSSRRLTGEIDASFFRLTKLESLDLSNNKLTGGVPEFFAELPNLKLLNLTGNKLTGPIPKALKEKSNTTFVLSLEGNAGLCLTGTCETKKSVIPIIASIAASIAVLVMIALISVMIWRIKRKKQGATKKDGQEKSKNIVFAYSEVIGITNNFKTVIGKGGFGEVYLGTLQDGREVAVKLLSQTSKQGYREFQSEANLLTIVHHRNLVSLVGYCDEGDVKALVYEYMNKGNLQQQLSDKNPNVLKWSERLQIAYDAAHGLDYLHNGCKPPIVHRDMKTSNILLNGSMQAKISDFGLSRAFANDIDTHVSTTPAGTLGYLDPEFYSSGNLNKKSDVYSFGIILLEIITGQPAIRAATAGSVSHILHWVNPRLENGDIGSIVDPRLEGKYNSNSAWKFVEIAMSCIPPTAIQRPDISHVVTELKECLALEKAIERTESSRRKSSNSLDMSSLQLESIRGPYAR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0328 610 CDD STKc_IRAK 306 572 - -
Glsi06g0328 610 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Glsi06g0328 610 SUPERFAMILY Protein kinase-like (PK-like) 287 570 IPR011009 -
Glsi06g0328 610 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 376 583 - -
Glsi06g0328 610 PANTHER OS07G0107800 PROTEIN-RELATED 91 581 - -
Glsi06g0328 610 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Glsi06g0328 610 FunFam Leucine-rich repeat receptor-like protein kinase 277 375 - -
Glsi06g0328 610 PRINTS Leucine-rich repeat signature 170 183 - -
Glsi06g0328 610 PRINTS Leucine-rich repeat signature 191 204 - -
Glsi06g0328 610 Gene3D Transferase(Phosphotransferase) domain 1 376 597 - -
Glsi06g0328 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Glsi06g0328 610 Gene3D Ribonuclease Inhibitor 104 224 IPR032675 -
Glsi06g0328 610 SMART serkin_6 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0328 610 FunFam Leucine-rich repeat receptor-like kinase 102 232 - -
Glsi06g0328 610 ProSiteProfiles Protein kinase domain profile. 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0328 610 Gene3D Phosphorylase Kinase; domain 1 282 375 - -
Glsi06g0328 610 SUPERFAMILY L domain-like 99 217 - -
Glsi06g0328 610 Pfam Protein tyrosine and serine/threonine kinase 302 570 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0328 Glsi-ChrGlsi06 2721108 2728133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0328 90 588 Receptor kinase-like Gene Family AT1G07560 49.008 1.56e-164 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi06g0328 PK_Tyr_Ser-Thr 1.5e-49 CL0016