Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0327 ATGCTAGCTGATGCTATCCTGGACATCAAGAGCAAATACATGATCTCCAGATTAGATTGGCAAGGAGATCCATGTATTCCAAAGCAACTTGCATGGGAGGGACTAAGATGCAACTCCGACATCAGTGGTAGCAACGCTAGGATCACCTCAGTGAACCTGAGCGCAAGCAAATTGACAGGGCCCATAGCTACTTCATTTTCACAACTTACAGAACTAGAGTCCCTGGATTTGTCATTCAATGACTTGTCAGGACCGCTGCCTGAATTTCTAGCAGAATTGCCGAAGTTGAGAATCCTTAATTTGAATGGCAACAAGTTTACAGGTCAAATTCCCAGGGCTCTTAAGGAAAAGTCAGACGTAACTTTGCAATTGAGTTTGGATAATAACCCTGGTCTTTGTCTGACGGATTCATGCAAAAAGCAGAAGTTTGTTATGCCACTTGTCGCATCTATTTCAGCTTTGATTGTAATTCTCTTCGTTGCTCTGGTAATATGGATCTTCAAAACCAAAAAAATAAAAGTGGTTTTTACTGATTCTACAAAGGAAGAATCATTGGAACTCAAAAATCGAGCCTTTTCTTACTCCATAATTCTCAGGATCACTGATAACTTACAAGAATTGATTGGAGAAGGAGGATTTGGAAAGGTTTATTTGGGAACTCTGAAGAATCATACTCAAGTTGCTGTAAAGTTACTTTCTCAATCATCAATGCAAGGTTATAGGGAATTTCGATCAGAGGTAGAACTCCTAATGGTTGTTCATCATAGACACTTAGTTTCTCTCATTGGATACTGTGAAGAAGGTGCTGTGAGGGCATTAATTTATGAATATATGGCTAATGGCAACCTCCAACAACATTTATCAGATGAGAAACCAAATGTTTTGCAATGGAATGAAAGGCTTCAAATAGCATTGGATGCAGCATACGGATTGGACTATCTGCATAATGGTTGTAAGCCTCCGATAGTCCACAGAGACTTAAAGACTTCCAACATTTTGCTAAACGAAAACATGCAAGCCAAGATTTCTGACTTTGGACTGTCTAGAGCTTTTGCAAATGACATTGACACTCATGTAACAACTCGCCCTGCTGGCACACTTGGTTACCTTGATCCTGAATTCCAAACTTCTGGAAACCTGACCAAAAGGAGAGATGTTTATAGTTTTGGGGTGATTCTGCTTGAGCTAATCACGGGCCAACCAGCAATAAGAAGAGAACTTGGCACCATCAGTCACATACTTCATTGGATTACCCCTAAACTTGAAAGCGGGGATATTCAATCCATTGTGGATCCAAGGTTACAAGGAAAATACAGTGTTAATTCTGCTTGGAAATTCGTAGACATAGCCATGTCATGCACTCCATCATCTGCAATCCAAAGGCCTGATATCAGTCAAATAGTAGCTGAACTAAAGGAATGTCTAGCACTGGAAATAACCTTGGAAAGGATCAAGAACAAAAGGGGAAATTCAAGTACTTTTTTGGATATGGGTTCTCTGTGGTTTGATTCAGGCATCATTCCGTCTGCTAGGTAG 1536 0.403 MLADAILDIKSKYMISRLDWQGDPCIPKQLAWEGLRCNSDISGSNARITSVNLSASKLTGPIATSFSQLTELESLDLSFNDLSGPLPEFLAELPKLRILNLNGNKFTGQIPRALKEKSDVTLQLSLDNNPGLCLTDSCKKQKFVMPLVASISALIVILFVALVIWIFKTKKIKVVFTDSTKEESLELKNRAFSYSIILRITDNLQELIGEGGFGKVYLGTLKNHTQVAVKLLSQSSMQGYREFRSEVELLMVVHHRHLVSLIGYCEEGAVRALIYEYMANGNLQQHLSDEKPNVLQWNERLQIALDAAYGLDYLHNGCKPPIVHRDLKTSNILLNENMQAKISDFGLSRAFANDIDTHVTTRPAGTLGYLDPEFQTSGNLTKRRDVYSFGVILLELITGQPAIRRELGTISHILHWITPKLESGDIQSIVDPRLQGKYSVNSAWKFVDIAMSCTPSSAIQRPDISQIVAELKECLALEITLERIKNKRGNSSTFLDMGSLWFDSGIIPSAR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0327 511 FunFam Leucine-rich repeat receptor-like protein kinase 179 277 - -
Glsi06g0327 511 CDD STKc_IRAK 208 473 - -
Glsi06g0327 511 Pfam Protein tyrosine and serine/threonine kinase 204 471 IPR001245 GO:0004672|GO:0006468
Glsi06g0327 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Glsi06g0327 511 SUPERFAMILY L domain-like 32 129 - -
Glsi06g0327 511 SUPERFAMILY Protein kinase-like (PK-like) 184 471 IPR011009 -
Glsi06g0327 511 Gene3D Phosphorylase Kinase; domain 1 208 278 - -
Glsi06g0327 511 PANTHER OS07G0107800 PROTEIN-RELATED 4 475 - -
Glsi06g0327 511 SMART serkin_6 202 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0327 511 FunFam Leucine-rich repeat receptor-like kinase 2 133 - -
Glsi06g0327 511 ProSitePatterns Protein kinases ATP-binding region signature. 208 230 IPR017441 GO:0005524
Glsi06g0327 511 Gene3D Transferase(Phosphotransferase) domain 1 279 491 - -
Glsi06g0327 511 ProSiteProfiles Protein kinase domain profile. 202 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0327 511 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 278 483 - -
Glsi06g0327 511 Gene3D Ribonuclease Inhibitor 4 129 IPR032675 -
Glsi06g0327 511 Pfam Leucine rich repeat 47 106 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0327 Glsi-ChrGlsi06 2716182 2720194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0327 4 511 Receptor kinase-like Gene Family AT2G28970 46.591 2.80e-162 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi06g0327 PK_Tyr_Ser-Thr 2.9e-50 CL0016