Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0325 ATGGGTACCCAGGGCAACGGAAAGCAAGTAGTTGCGAATGAATTTGAGCGTCCTGGAAATGAGGTTGCAGACATTGATGCCATCATGAAAATCAAAAGTACTTATGGGCTCTCCAGAATCAACTGGCAAGGTGACCCCTGCGTTCCCCCTAGCTTTGCATGGGACGGTTTAAATTGTAGCTCTGACAACAATTCAAGAATCATTTCATTGAACCTGACCTCAAGCAAACTAACTGGACAAATAGCTGCTTCATTTGCCAATCTGGAAAAATTGCAGGCCTTGGATTTGTCAAACAATGAACTGACTGGACAACTACCAGAATTTCTTGCAGATCTTCCTAATTTGACATTCCTTAATTTGACAGGAAATAATCTCATAGGTTCAATTCCCAAGGCTCTGAGGGAAAAGGCTGATTTGCAGCTGAGTGTGGCTGACAATCCAGATCTTTGTCAGAAAGATTCATGCAGAGAACACAAGTTTGTAATCCCACTTATGGTGTCAATTGCAGTTTTTCTCATAATTGTCATCGTTTCTTTGATGATCTGGAAACTCAGAAAGAAAAGACTAGTTGTGTCTACTGAATATCAGAAGAGGGAAGTTCTAAAACAAAAGAATCGATCATTTTCTTACTCTCAAGTTTTCTTCATCACCAACAATTTCGAGACTGCTATTGGAGAAGGAGGATTTGGGAAAGTTTACCTTGGCACTTTAGAAGATGATACTCTTGTTGCGGTTAAGTTACTTTCTCCATCATCAAGACAAGGATATAAGGAATTTCAATCAGAGGCTCAACTCTTAACGGTTGTTCATCATAGAAACTTGGTTTCACTTGTTGGCTATTGTAATGAACACGACTTCACGGCATTGATCTATGAATATATGGATAATGGAGACCTCAGACAACAATTATCAGTGAAAAATACAAATGTTTTGAGGTGGCATGAGAGACTTCAAATCATAGTGGATGCAGCAAAAGGATTGGACTATATGCATAATGGTTGTGGGACTCCTATAATCCACAGAGACTTAAAGCCATCCAACATCTTATTAAATAAAAAAATGCTAGCCAAGATTGCCGATTTTGGGTTGTCCAGAGCATTCACCAATGAAATAGATTCTCATCTATCAACTCAACCAGCTGGTACACCTGGTTACATTGATCCTGAATTTCAAAGATCTGGAAACCTTAATAAGAAAATAACTACTCCGTTTGCTAGGTAG 1221 0.3907 MGTQGNGKQVVANEFERPGNEVADIDAIMKIKSTYGLSRINWQGDPCVPPSFAWDGLNCSSDNNSRIISLNLTSSKLTGQIAASFANLEKLQALDLSNNELTGQLPEFLADLPNLTFLNLTGNNLIGSIPKALREKADLQLSVADNPDLCQKDSCREHKFVIPLMVSIAVFLIIVIVSLMIWKLRKKRLVVSTEYQKREVLKQKNRSFSYSQVFFITNNFETAIGEGGFGKVYLGTLEDDTLVAVKLLSPSSRQGYKEFQSEAQLLTVVHHRNLVSLVGYCNEHDFTALIYEYMDNGDLRQQLSVKNTNVLRWHERLQIIVDAAKGLDYMHNGCGTPIIHRDLKPSNILLNKKMLAKIADFGLSRAFTNEIDSHLSTQPAGTPGYIDPEFQRSGNLNKKITTPFAR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0325 406 FunFam Leucine-rich repeat receptor-like protein kinase 196 293 - -
Glsi06g0325 406 Gene3D Ribonuclease Inhibitor 25 152 IPR032675 -
Glsi06g0325 406 PANTHER OS07G0107800 PROTEIN-RELATED 16 399 - -
Glsi06g0325 406 SUPERFAMILY L domain-like 52 135 - -
Glsi06g0325 406 FunFam Os07g0541700 protein 299 382 - -
Glsi06g0325 406 MobiDBLite consensus disorder prediction 378 406 - -
Glsi06g0325 406 Pfam Leucine rich repeat 69 125 IPR001611 GO:0005515
Glsi06g0325 406 SUPERFAMILY Protein kinase-like (PK-like) 199 397 IPR011009 -
Glsi06g0325 406 PRINTS Leucine-rich repeat signature 112 125 - -
Glsi06g0325 406 PRINTS Leucine-rich repeat signature 91 104 - -
Glsi06g0325 406 Gene3D Transferase(Phosphotransferase) domain 1 294 401 - -
Glsi06g0325 406 FunFam Leucine-rich repeat receptor-like kinase 23 152 - -
Glsi06g0325 406 ProSiteProfiles Protein kinase domain profile. 218 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0325 406 Pfam Protein tyrosine and serine/threonine kinase 220 392 IPR001245 GO:0004672|GO:0006468
Glsi06g0325 406 SMART serkin_6 218 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0325 406 ProSitePatterns Protein kinases ATP-binding region signature. 224 246 IPR017441 GO:0005524
Glsi06g0325 406 Gene3D Phosphorylase Kinase; domain 1 190 293 - -
Glsi06g0325 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0325 Glsi-ChrGlsi06 2470663 2476983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0325 24 399 Receptor kinase-like Gene Family AT1G51820 48.387 1.94e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi06g0325 PK_Tyr_Ser-Thr 3.4e-37 CL0016