Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0320 ATGGCACGCAAGCCAATCAACAACTCCGTTGCCTTCTCTGTTGGTATGACTCGGCCTCACCTCCCAGGACCAGCCAAGGAGATCAGAAATGTAGGCAACCTGAGCAGCAGCGCCAGAGTAGGAATCCGGGAACTGCGAAGATCCAAAATGTCGTGGCAAACGTACGTCGATGATCATCTCATGTGTGATATTGACGGCCACCGCCTCACCGCCGCTGCAATCATCGGCCTCGACGGCAGCGTCTGGGCCCAGAGCTCCAGCTTCCCTCAGTTTAAACCTGAAGAAATTACTGCCATCGTCAAAGATTTTGATGAACCTGGATCCCTTGCCCCTACTGGATTACACCTGGGTGGTACAAAGTACATGGTCATCCAAGGAGAACCTGGAGCTGTTATCCGTGGGAAGAAGGGCGCTGGCGGGGTCACTGTTAAGAAAACCAGCCAAGCTCTGATTTTTGGTATCTATGACGAACCTTTGACCCCAGGACAGTGTAACATGATTGTTGAGAGGTTGGGAGATTATCTGATTGATCAGGGGCTGTAG 543 0.5193 MARKPINNSVAFSVGMTRPHLPGPAKEIRNVGNLSSSARVGIRELRRSKMSWQTYVDDHLMCDIDGHRLTAAAIIGLDGSVWAQSSSFPQFKPEEITAIVKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGAGGVTVKKTSQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0320 180 CDD PROF 51 179 IPR005455 GO:0003779
Glsi06g0320 180 Gene3D Dynein light chain 2a, cytoplasmic 48 180 - -
Glsi06g0320 180 PANTHER PROFILIN 50 179 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 52 61 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 89 109 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 70 79 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 113 127 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 162 179 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Profilin signature 149 162 IPR005455 GO:0003779
Glsi06g0320 180 SMART prof_2 50 180 IPR005455 GO:0003779
Glsi06g0320 180 Pfam Profilin 50 179 IPR005455 GO:0003779
Glsi06g0320 180 SUPERFAMILY Profilin (actin-binding protein) 51 179 IPR036140 -
Glsi06g0320 180 PRINTS Plant profilin signature 101 115 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 166 179 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 120 129 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 50 63 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 153 166 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 76 89 IPR005455 GO:0003779
Glsi06g0320 180 PRINTS Plant profilin signature 133 148 IPR005455 GO:0003779
Glsi06g0320 180 FunFam Profilin 50 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0320 Glsi-ChrGlsi06 2194923 2197754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0320 50 180 Cytoskeleton Gene Families AT4G29340 75.373 4.79e-76 222