Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0317 ATGAATGGAAAGTCAAGAAACGAGGTCTCTCCTCAGCTGCTAGATTTAATCCCGAAAGACAGAGAGTGGCATATAAACAGAGACGAAGGAAGAAGCCACAAGCCTTCAGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCCCCAGGTGAGGACTGGTCTATCATTGACCACATAAAAAACATCGAAAGAGAAAGAGATGAATCGCTACTCTCTCTAGGTTACTTCTCAACCTTACCCCCTACAATCCAGAACACCACCAATGGCTGCCAAACCCAGAAAATTTCAACATCTGACACCCCACCTGGGGCTATTTTGTCCTCTCCCTGGGCTTCCATAGGCTACCAGGGGAAGACTCAACATAATAAACACAAGGGGGCTTCATCATCATTTCTTCAGTTCCAATCTAGCCCTGCTATGGGAAAGGAAGCAGCATCACAACCCCGTTGCCCTAAACTGGTAGACTTACAGACTGCAGAGATGAAAGCGTTAGCTCCCTCTTCTGCAAATACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCTCCAGGACCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTCAGAAAGAACCTTGCAAGCAGCAGCTCTTCTAAGCCACCCAGTGAGTCTCAGGATCATCAGCGTGTCGTTTCAGACAAGGCTGCTGGTAAGAAACCTATTGATAACTCCACTAAAAGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACCTCAATGCTTACGATAGCTATGAAAAACTCTCCTTTTCTGTTGACGAACTCTTCAGAGGGCTACTTGCAGCTCAAAGAGATTCCTGTGCTGGTGGAACTAAGAACAAGCAAGAGGAAGAGAAAACCATTACGGGTTTATTGGATGGAAGGGGGGAATACACTCTTGTTTACGAGGATAACGAAGGAGACAGGATGCTTGTAGGGGATGTGCCGTGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGCGTATTGAAGAGTTCTGAGCTTTCTGCATTTACCCTTGGTAATAAGCAAGGCAAGATTCCGCATGACTCAGCCTGA 1074 0.4674 MNGKSRNEVSPQLLDLIPKDREWHINRDEGRSHKPSEERKLELRLGPPGEDWSIIDHIKNIERERDESLLSLGYFSTLPPTIQNTTNGCQTQKISTSDTPPGAILSSPWASIGYQGKTQHNKHKGASSSFLQFQSSPAMGKEAASQPRCPKLVDLQTAEMKALAPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSSSKPPSESQDHQRVVSDKAAGKKPIDNSTKSLFVKINMDGVPIGRKVDLNAYDSYEKLSFSVDELFRGLLAAQRDSCAGGTKNKQEEEKTITGLLDGRGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQGKIPHDSA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0317 357 Gene3D - 228 348 - -
Glsi06g0317 357 MobiDBLite consensus disorder prediction 20 48 - -
Glsi06g0317 357 FunFam Auxin-responsive protein 228 348 - -
Glsi06g0317 357 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Glsi06g0317 357 MobiDBLite consensus disorder prediction 164 181 - -
Glsi06g0317 357 Pfam AUX/IAA family 41 342 IPR033389 -
Glsi06g0317 357 SUPERFAMILY CAD & PB1 domains 230 334 - -
Glsi06g0317 357 MobiDBLite consensus disorder prediction 195 211 - -
Glsi06g0317 357 MobiDBLite consensus disorder prediction 164 225 - -
Glsi06g0317 357 MobiDBLite consensus disorder prediction 20 46 - -
Glsi06g0317 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 340 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0317 Glsi-ChrGlsi06 2168762 2171600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0317 237 348 B3 DNA Binding Superfamily AT4G23980 35.714 2.27e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi06g0317 AUX_IAA 5e-71 CL0072