Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0316 ATGAATCTTGTACGGAAGCCCCACTTTATGTTGCTTCACTTTCTTCTCTTTCTGCTCCACCTTCACTCCCTCTGTTCCTATACGACACCTATGGATTGTACGGACATAACCCGCGTCTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAACCAGCCGTTGGCCTTAGTACAGAGCATGTTCGATGTATTGCCCAATGACATTACTGTTGAAGGCAATGGCTGGGACTACATATTTATCAGGAAGAACTGTTCTTGTGCTGCTGGTATAAAGAAATACGTATCTAACACCACGTTTACAGTAAAATCCAATGAAGGGTTTGCGCATGACTTGGTGATAAAGGCCTATGATGGACTTGCTTTCTTGCCAAACACGACCAGGAAGGCAAAAAAGGGTACCATTATATCACTGAGGTTGTTCTGTGGCTGCTCCAGTGGACCATGGAACTATTTGGTGAGTTATGTCATGAGAGATGGAGATAGTATTGAATCTTTGGCGAGTCGCTTCGGGGTTAGCATGGATAGTATAGAGACGATAAATGGCATCAACAATCCCGATAATGTTACCGTGGGTTCTCTCTATTATATACCTCTGAATTCGGTTCCTGGAGAGCCATATCCCTTGAAGAATGATACTTCTCCAGGCCCTGTTCCTGCCCCATCTATTGACAATCATTCTGCTAATCAAGTCAGTCATGAGGCTCATGTACCCTACGGATGGATCATTGGGGGTTTAGGGATTTTTCTTGCGCTGATAATATTAAGCACAATTCTTTATTTTTTCGTGAGATCGTCAAAATGTTTTGCTGAAGCAAGAAGTCATTCAAAAGATGCCGAGGGCAAGATCTCTCAAAGGTTTCAAATTCTTCAGAATCCAAGTTTTTGTTGTGGTTCAGGAAGGTACATGCATGGCAAACCTGTAGACCAGAGGCAAACTGATTGTGAATCCAGCAACCACCAGATTCCCATTCCCAAAGTTTCAACGATAGGGATTGACGTATTTGATGTGGAGAATCCTATAGTTTTCACATTTGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGGATGGAACTTATGGTTCTGTTTATTATGGCTTCCTTCGTGACCAGGAGGTTGCTATTAAAAGAATGACTGCTACAAAAACTAAAGAGTTCTTGTCAGAGATGAAAGTCCTGTGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTACGCAGCTAGTCACGATGAGCTTTTCCTTATTTATGAATATGCCCAGAAGGGTTCACTCGGAAGTCATTTGCATGATCCTCAGACTAAGGGTTCCTCCTCGCTTTCTTGGACCGTGAGGGTCCAGATTGCTCTTGATGCCGCTAGGGGCCTTGAATACATCCATGAGCACACCAAAACTCATTACGTCCATCGAGATATTAAGACAAGCAACATCTTACTTGATGCTTCCTTTAGAGCCAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAGAGCAAATGAGGGAGAAAAAATTACTGTGACCAAAGTCGTTGGCACATATGGTTATCTTGCACCAGAATACTTAAGTGATGGCCTTGCGACGACCAAAAGTGATGTCTATGCATTTGGCATTGTTCTTTTTGAGATTATATCAGGGAAGGAGGCCACTATTCGAACGGAAGGAACCATGACAAAAACCCCTGAAAGACGTTCACTGGCATCTATTATGTTGGCAGCTCTTAGAAACTCACCTGATTCCATGAGTATGTCAAGTTTGAGAGATCATATTGATCCCAATATGATGGACCTGTATCCCCATGATTGTGTATATAAGATGGCCATGCTGGCAAAGCAATGCGTGGATAATGATCCCATCTTAAGACCTGATATGAAACGAGTAGTGATTTCACTCTCACAGATCCTCCTGTCTTCTGTTGAATGGGAAGCAACTCTTGCTGGGAATAGCCAGGTATTCAGTGGGCTTGTTCAGGGAAGATAG 1998 0.4279 MNLVRKPHFMLLHFLLFLLHLHSLCSYTTPMDCTDITRVCTSFLAFKPQPNQPLALVQSMFDVLPNDITVEGNGWDYIFIRKNCSCAAGIKKYVSNTTFTVKSNEGFAHDLVIKAYDGLAFLPNTTRKAKKGTIISLRLFCGCSSGPWNYLVSYVMRDGDSIESLASRFGVSMDSIETINGINNPDNVTVGSLYYIPLNSVPGEPYPLKNDTSPGPVPAPSIDNHSANQVSHEAHVPYGWIIGGLGIFLALIILSTILYFFVRSSKCFAEARSHSKDAEGKISQRFQILQNPSFCCGSGRYMHGKPVDQRQTDCESSNHQIPIPKVSTIGIDVFDVENPIVFTFEEIFSSTDGFSDSNLLGDGTYGSVYYGFLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHDELFLIYEYAQKGSLGSHLHDPQTKGSSSLSWTVRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGRANEGEKITVTKVVGTYGYLAPEYLSDGLATTKSDVYAFGIVLFEIISGKEATIRTEGTMTKTPERRSLASIMLAALRNSPDSMSMSSLRDHIDPNMMDLYPHDCVYKMAMLAKQCVDNDPILRPDMKRVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0316 665 SMART serkin_6 354 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0316 665 SUPERFAMILY Protein kinase-like (PK-like) 333 637 IPR011009 -
Glsi06g0316 665 Pfam LysM domain 154 191 IPR018392 -
Glsi06g0316 665 SUPERFAMILY LysM domain 152 197 IPR036779 -
Glsi06g0316 665 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Glsi06g0316 665 Gene3D Phosphorylase Kinase; domain 1 331 425 - -
Glsi06g0316 665 Gene3D LysM domain 148 203 IPR036779 -
Glsi06g0316 665 SMART LysM_2 153 197 IPR018392 -
Glsi06g0316 665 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Glsi06g0316 665 ProSiteProfiles Protein kinase domain profile. 354 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0316 665 Pfam Protein tyrosine and serine/threonine kinase 358 635 IPR001245 GO:0004672|GO:0006468
Glsi06g0316 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 76 659 IPR044812 GO:0019199|GO:0045087
Glsi06g0316 665 Gene3D Transferase(Phosphotransferase) domain 1 427 652 - -
Glsi06g0316 665 FunFam PTI1-like tyrosine-protein kinase 3 426 651 - -
Glsi06g0316 665 FunFam Kinase family protein 329 425 - -
Glsi06g0316 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0316 Glsi-ChrGlsi06 2155992 2160032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0316 30 665 Receptor kinase-like Gene Family AT1G51940 65.994 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi06g0316 PK_Tyr_Ser-Thr 3e-49 CL0016