Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0310 ATGAAGCATCTCAATTCTCCGGGTTCGCTAACGTCAAGCTTGAAGATTTTAATTGGACTTGAGTGCATGAAGTGGGGAAATAATCTGAAGAGAAATGGAAGGAGAATGACAAATGATAAGGACAACGAAAGACGCAAGGAAATGAGCAAAAAGAAGGCGGCGGTGCGGTCTGAATTTCAAGTGAGGAAAATAAACAAGCGTTGTAAGGATACGCTTCGACCCCATAAAACAAGGAAATGTGGGCCACCACCTTCTCCACGTGTTCTATTTTCACATGCACTCTATCTTCCCGGCTATTCATTACACCATTTTCTTTCCCCTGATTGTTTTCTTTCTGGAGCTGATCGTCGGTGGAGGCTCGACCGCGTCATTTGGCGGAGAATCGGCATGACTCGGAGGTGCTCTCACTGTAGCAACAACGGGCACAACTCCCGAACATGCCCATCCCGTAGTGGTGGCGGCGGCGGCAGTGGAGGAGGAGGTTTGAAGCTCTTCGGTGTTAGACTCACCGATGGATCAATCATTAAAAAGAGCGCCAGCATGGGAAACCTCTCCGCTCATTACCATTCTTCTTCGTCCGCCGCTGGATCGCCGAATCCCAGCTCCCCCACCTCCGACCCTTTCCGAGATATGGTTAATGAATCTGACGGCTGCTTGTCAGATGACCCATCTCATGCCTCCAGTTCCGCGAACCGCCGTGGAGAAAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCGGATGTTCTTAATTGGTCTCCAAAAGCTGGGTAAAGGAGACTGGCGTGGAATAGCTCGCAATTTTGTTATGTCAAGAACCCCAACTCAAGTAGCAAGTCATGCCCAAAAGTACTTTATTCGGCGGAGTAGTGCCACCCGGAGAAAGAGGCGTTCCAGCCTTTTCGACATGCAAGCTTCAGATCCACCTTCGGTGCCAGAAGAACAAGTATTACTGCCACCATCTGAGAACTCACAACCTGATAGTGCAAAATCACAGCCATCATTAAATCTCTCCCTCAAATCAGAATATGACCCCATGGAAACTAATTGTCAAGAAAATGCAGAAGAGCCCGATGAAACCATGATAAGATCAAGTGAATTGAATCCAGTGGCTCCTGGATTCATGCCAACATATTTACCTGTTTCATTTTCCGTATGGCCATCAAGTGCAGCTCCCTTTGAAGAAGTTAATGGAGCTGAGACATCTCGTCATCAGGTCCTCAAGCCAATCCCAATCATTCCCAAGGAACCTGTCAATGTTGATGAACTTGTTGGCATGTCTCAGCTGAATCTTGGGGAAACACAGGTACGTGATAGAGAGCGTTCCCCACTTTCCTTGAAGTTGCTAGGAGAGCCTTCAAGGCAGTCAGCATTCCATGCAAATGCGCAAGTTGGTGGTTCGGATTTAAACAATGGCAAGAATAGTGCAATTCAAGCGGTTTAA 1446 0.4744 MKHLNSPGSLTSSLKILIGLECMKWGNNLKRNGRRMTNDKDNERRKEMSKKKAAVRSEFQVRKINKRCKDTLRPHKTRKCGPPPSPRVLFSHALYLPGYSLHHFLSPDCFLSGADRRWRLDRVIWRRIGMTRRCSHCSNNGHNSRTCPSRSGGGGGSGGGGLKLFGVRLTDGSIIKKSASMGNLSAHYHSSSSAAGSPNPSSPTSDPFRDMVNESDGCLSDDPSHASSSANRRGERKKGVPWTEEEHRMFLIGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKYFIRRSSATRRKRRSSLFDMQASDPPSVPEEQVLLPPSENSQPDSAKSQPSLNLSLKSEYDPMETNCQENAEEPDETMIRSSELNPVAPGFMPTYLPVSFSVWPSSAAPFEEVNGAETSRHQVLKPIPIIPKEPVNVDELVGMSQLNLGETQVRDRERSPLSLKLLGEPSRQSAFHANAQVGGSDLNNGKNSAIQAV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0310 481 MobiDBLite consensus disorder prediction 33 52 - -
Glsi06g0310 481 CDD SANT 241 286 IPR001005 -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 137 151 - -
Glsi06g0310 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 290 IPR017930 -
Glsi06g0310 481 Pfam Myb-like DNA-binding domain 241 286 IPR001005 -
Glsi06g0310 481 PANTHER TRANSCRIPTION FACTOR KUA1 132 370 - -
Glsi06g0310 481 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 288 IPR006447 GO:0003677
Glsi06g0310 481 ProSiteProfiles Myb-like domain profile. 234 286 IPR001005 -
Glsi06g0310 481 Gene3D - 240 291 - -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 318 335 - -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 31 52 - -
Glsi06g0310 481 SUPERFAMILY Homeodomain-like 236 290 IPR009057 -
Glsi06g0310 481 SMART sant 238 288 IPR001005 -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 290 335 - -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 137 157 - -
Glsi06g0310 481 FunFam transcription factor MYB1R1 240 291 - -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 186 209 - -
Glsi06g0310 481 MobiDBLite consensus disorder prediction 186 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0310 Glsi-ChrGlsi06 2115994 2122562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi06g0310 Myb_DNA-binding 4.4e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0310 06 2115994 2122562 Glsi06g0310 06 2115994 2122562 ECH