LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0305	ATGCCGGTACTCCGTAGTGGAGTGCGCAGGGGCCGAGCAGCAGCGAAGGGACAACAAGACCAGCAGCAGATTAATCCGATCGAAGAAGGGGAAGCAATTGCAACGAGGACAAGGAGGAGGCGGGCAGCGGCGGCGGCGGCGGCGGCAGTGCCGAAAAATAACAAGCAACAGCAACAGGCGGTGGTCAATGACAACGTAGTTGTCCCGTCAAAGGAGGAAGCGGATAGGGGGTTAAACGAAGCTCTTCGCATTGGTACTGCCGGGGGTGACGTGGGTGGCGGTTGTGGAGCGGATAAGGAAGAGATAGGGGAGAAACCGATGGATGATCACGATAGTGGAGCTCGGAGCAATGATAAGGCCGTTGTTGGTGAAGAAGAGGGGAGCACCCCTCCTGTTCCTGAGAAGGTTCAAGTTTGTGGTTCCCCTTGGTATAAAGTAGAAAAAAAACTGGGAAAGGGTGGGTTTGGACAAGTATATGTTGGTCGACGTATTTCTGGTGTAAATATGAGTGAGAGAACTGGGCCTGGAGCTGTGGAGGTTGCATTGAAATTTGAGCATAAAAGTAGTAAAGGATGTAACTATGGACCACCGCATGAGTGGCAAGTGTACAACACTCTCGGTGGAAGTCATGGTGTGCCAAGAGTACACTTCAAGGGTAGGCAAGGTGGCTTTTATATTATGGTTATGGATATGCTGGGACCTAGCTTGTGGGATGTCTGGAATAATAGCTCTCATACAATGTCCCATGATATGGTTGCATGTATCGCCATTGAAGCAATATCCATATTGGAGAAGATGCATTCTCGAGGGTATGTTCATGGGGATGTAAAGCCTGAAAATTTTCTGCTTGGTACTCCTGGGACACCAGACGAGAAAAGATTGTTCCTTGTGGATCTTGGATTAGCTACTAGATGGCGGAATAATAGAACAGGTTTGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAGGGGCACAGTACGCTATGCTAGTGCCCATGCACATTTAGGTAGAACTTGCAGCAGGAGGGATGATCTGGAATCTCTTGCTTATACGCTGATTTTCCTTATTCGGGGCCGTCTCCCTTGGCAGGGGTTCCAGGGAGAAAACAAAGGGTTTCTTGTTTGCAAGAAGAAGATGGCAACATCTCCAGAGGCTTTATGTTGCTTCTGCCCGCAGCCTTTTAGGCAGTTTGTTGAACATGTAGTGAATTTGAAGTTTGATGAAGATCCTAACTACGCAAAATATATCTCTCTTTTTGATGGGATTGTTGCTCCAAATCCGGATATTAGGCCTATTAATACAGAAGGTGCACAGAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGACGATGATGAACAACCAAAAAAGAAGATTCGTATGGGTTTGCCAGCAACACAGTGGATAAGTATATACAATGCTCGCAAACCAATGAAACAAAGATATCACTACAACGTGTCAGATACAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATAAGCAGTGTGGCTTCATGTCAGAACCTGTGGGCCTTAATCATGGATGCGGGCACTGGTTTCACTGACCAATCTTATGAACTCTCCCCTCACTTTCTCCATAAAGAATGGATAATGGAGAAGTGGGAAAAAAATTTCTATATAAGTGCAATTGCTGGAGCTACAAATGGGAGCTCATTAGTAGTTATGTCTAAGGGCACCCAGTATTTACAGCAATCCTACAAAGTTAGTGATTCATTTCCTTTTAAGTGGATTAACAAAAAATGGAAGGAAGGATTCTATGTTACAGCAATGGCCACTGCAGGGGCCAGATGGGGAGTAGTTATGTCCCGTGGTGCAGCATTTTCTGAGCAGGTGGTTGAACTAGATTTTCTTTATCCTAGTGAAGGGATTCACAAGCGATGGGATAGTGGATATCGTATCACTGCAACTGCTGCAAACTGGGACCAAGCTGCTTTTGTCCTCAGTGTGCCAAGGAGGAAGCTTCCAGATGAAACACAGGAAACGCTCAGAACTTCTGCTTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAACCTCTATATTGCATCAATTTGCTATGGAAGAACAGTTTCTTGA	2124	0.459	MPVLRSGVRRGRAAAKGQQDQQQINPIEEGEAIATRTRRRRAAAAAAAAVPKNNKQQQQAVVNDNVVVPSKEEADRGLNEALRIGTAGGDVGGGCGADKEEIGEKPMDDHDSGARSNDKAVVGEEEGSTPPVPEKVQVCGSPWYKVEKKLGKGGFGQVYVGRRISGVNMSERTGPGAVEVALKFEHKSSKGCNYGPPHEWQVYNTLGGSHGVPRVHFKGRQGGFYIMVMDMLGPSLWDVWNNSSHTMSHDMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKRLFLVDLGLATRWRNNRTGLHVEYDQRPDVFRGTVRYASAHAHLGRTCSRRDDLESLAYTLIFLIRGRLPWQGFQGENKGFLVCKKKMATSPEALCCFCPQPFRQFVEHVVNLKFDEDPNYAKYISLFDGIVAPNPDIRPINTEGAQKLIGHKRGRLAMEDDDEQPKKKIRMGLPATQWISIYNARKPMKQRYHYNVSDTRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTDQSYELSPHFLHKEWIMEKWEKNFYISAIAGATNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWKEGFYVTAMATAGARWGVVMSRGAAFSEQVVELDFLYPSEGIHKRWDSGYRITATAANWDQAAFVLSVPRRKLPDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0305	707	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Glsi06g0305	707	ProSiteProfiles	Protein kinase domain profile.	144	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0305	707	CDD	STKc_CK1	144	420	-	-
	Glsi06g0305	707	Pfam	Protein kinase domain	144	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0305	707	ProSitePatterns	Protein kinases ATP-binding region signature.	150	183	IPR017441	GO:0005524
	Glsi06g0305	707	SUPERFAMILY	Protein kinase-like (PK-like)	144	426	IPR011009	-
	Glsi06g0305	707	Gene3D	Transferase(Phosphotransferase) domain 1	111	463	-	-
	Glsi06g0305	707	SMART	serkin_6	144	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0305	707	MobiDBLite	consensus disorder prediction	92	136	-	-
	Glsi06g0305	707	MobiDBLite	consensus disorder prediction	97	122	-	-
	Glsi06g0305	707	FunFam	casein kinase 1-like protein HD16	117	463	-	-
	Glsi06g0305	707	MobiDBLite	consensus disorder prediction	1	60	-	-
	Glsi06g0305	707	PANTHER	CASEIN KINASE-RELATED	136	672	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0305	Glsi-ChrGlsi06	2076455	2082151	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0305	138	378	AGC Kinase Gene Family	AT3G08730	23.457	3.61e-08	54.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Glsi06g0305		Pkinase	2.8e-16	CL0016