Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0302 ATGATTCCGGGATCAGAAAGATTTCCAATAGCTCAGCAGAAGTGGAATCTTGAAGAAGATGAAGATCGAAGATCGTTGTTGGCTATGGCAATGTCCTGCAAGGATGGTAAACTAGCAATGGACAACGGCAAATATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTCGAGAGGCTTTATCATGAATGCCCAAAACCCAGTTCCATTCGCCGCCAGCAGCTTATCCGTGAGTGCCCAATTCTCTCAAACATTGAGCCCAAACAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCGCGCCTTCAAGCTGTAAATAGGAAGCTGACAGCCATGAACAAGCTTCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTAGTGTACGAAAATGGCTACTTCCGCCAACATACTCAAAATACGACGCTTGCAACCAAAGACACAAGCTGTGAATCAGCCGTGACAAGTGGTCAACACAGTTTGACAACTCAGCACCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGTGGCCTAGTGGGTCTAGAACCCTCAAGGGTTGCAGAAATCCTCAAGGATCGGCCCTCGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAACAAATGGTGGAACCATAGAGTTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCCCGAGACTTTTGGTTGTTGCGCTATACTTCTGTTTTGGAAGATGGAAGCTTTGTGATCTGTGAGAGGTCTCTTAAAAACACTCAGAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATGCTGCCTAGTGGGTATCTTATAAGACCATGTGAAGGGGGTGGTTCTATCATTCACATTGTTGATCACATGGATTTAGAGCCATGGAGTGTGCCAGAAGTATTGCGTCCTCTATATGAATCTTCAACGGTGCTGGCTCAAAAGAAAACAATGGCGGCCTTACGTCAGTTGAGACAGCTATCTCATGAAGTTTCCCAGTCAAATGTTTCTGGATGGGGAAGAAGACCTGCAGCACTACGAGCACTTAGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTTAATGGGTTTACCGATGAGGGTTGGTCGATGATTGGCAATGATGGAATTGATGATGTTACAATTCTAGTTAATTCATCCCCTGACAAGTTAATGGGTTTAGATCTTTCCTTTGCCAATGGATTTCCCTCTGTCAGTAATGCTGTCTTGTGTGCCAAAGCATCAATGCTATTACAGAATGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCCGCTGCCATTAAAGTTGGTCCTTGTAGCTTACCAGGATCTCGTGCTGGAAATTATGGAGGTCAAGTCATACTTCCTCTTGCCCACACTATTGAGCATGAAGAGTTTTTGGAAGTCATCAAATTGGAAGGGATTGCTCATACTCCTGAAGAAGCAATACTGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGCGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTAATATTTGCTCCAATTGATGCTTCCTTTGCTGATGATGCGCCCCTTTTACCATCTGGATTCCGCATCATTCCTCTTGATTCTGGGAAGGAAACTTCCAGTCCAAATCGCACCCTTGACCTTGCATCTGCTCTCGACATTGGCCCTACTGGAAATAAAGCATCTAACGATTATGCTGGAAATTCTGGCTGTATGAGATCTGTTATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCCATGGCCCGGCAATATGTCCGTAGCATTATATCATCAGTCCAAAGGGTGGCCTTAGCACTTTCTCCTTCTCATTTGAGCTCACATGCTGGGCTTAGGCCACCATTGGGCACTCCTGAAGCACAAACACTGGCTCGTTGGATATGCAACAGTTATAGGTGCTACATGGGTGTGGATCTACTCAAATCTAGTAACGAGGGAAACGAATCCATCCTCAAGTCCTTGTGGCATCACTCAGATGCATTATTGTGCTGCTCTCTAAAGGCATTGCCAGTATTCACATTTGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTACAAGACATAATTTTAGAGAAGATATTCGACGATCATGGACGAAAAATTCTCTGTTCAGAGTTTCCCCAGATTATACAACAGGGCTTTGCTTGCCTTCAAGGGGGTATCTGTCTCTCAAGCATGGGGAGGCCAGTCTCGTATGAAAGAGTAGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATCTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2598 0.458 MIPGSERFPIAQQKWNLEEDEDRRSLLAMAMSCKDGKLAMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPSRVAEILKDRPSWFRDCRAVDVLNVLPTTNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSFVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKKTMAALRQLRQLSHEVSQSNVSGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGIDDVTILVNSSPDKLMGLDLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLPGSRAGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHTPEEAILPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKETSSPNRTLDLASALDIGPTGNKASNDYAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRPPLGTPEAQTLARWICNSYRCYMGVDLLKSSNEGNESILKSLWHHSDALLCCSLKALPVFTFANQAGLDMLETTLVALQDIILEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0302 865 CDD bZIP 96 135 - -
Glsi06g0302 865 ProSiteProfiles START domain profile. 178 393 IPR002913 GO:0008289
Glsi06g0302 865 MobiDBLite consensus disorder prediction 159 181 - -
Glsi06g0302 865 Pfam MEKHLA domain 722 864 IPR013978 -
Glsi06g0302 865 SMART HOX_1 41 107 IPR001356 GO:0003677
Glsi06g0302 865 Coils Coil 99 140 - -
Glsi06g0302 865 Gene3D - 222 404 IPR023393 -
Glsi06g0302 865 ProSiteProfiles 'Homeobox' domain profile. 39 103 IPR001356 GO:0003677
Glsi06g0302 865 FunFam homeobox-leucine zipper protein ATHB-15 223 404 - -
Glsi06g0302 865 SMART START_1 187 397 IPR002913 GO:0008289
Glsi06g0302 865 Gene3D - 38 110 - -
Glsi06g0302 865 SUPERFAMILY Homeodomain-like 43 107 IPR009057 -
Glsi06g0302 865 CDD START_ArGLABRA2_like 182 397 - -
Glsi06g0302 865 Pfam Homeodomain 44 102 IPR001356 GO:0003677
Glsi06g0302 865 MobiDBLite consensus disorder prediction 159 177 - -
Glsi06g0302 865 SUPERFAMILY Bet v1-like 187 382 - -
Glsi06g0302 865 Pfam START domain 188 395 IPR002913 GO:0008289
Glsi06g0302 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 40 865 IPR044830 GO:0003700
Glsi06g0302 865 FunFam Homeobox-leucine zipper protein REVOLUTA 44 99 - -
Glsi06g0302 865 CDD homeodomain 44 104 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0302 Glsi-ChrGlsi06 2053921 2060646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0302 29 817 Homeobox Transcription Factor Family AT1G52150 86.237 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi06g0302 START 2.3e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0302 06 2053921 2060646 Glsi07g0340 07 2272824 2279984 CCT
Glsi06g0302 06 2053921 2060646 Glsi06g0302 06 2053921 2060646 ECH