Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0301 ATGTTCATGGAAATGCCGGAGTACTTTGTCGGTGGCTATTTTGGCACCGGACTCGACCAATTCTCGACGGAGAAGCGGCACGGTGACCAGAAGCCCGGCGAGCCTTTTGCCATTGACGACCTCCTCGACTTCTCTAACGCGGACGCTATCATGTCCGACGGTTTTTTTGATAATGTCGCCGGAAACTCCACCGAATCTTCCACTTTCACCGCCGTTGACAGCTGCAACTCCTCAAATTCGGGCGGGGACAACCATTTCTCAAGCAACGTTGGCTCCCGCGGCTTCGGCGATCCTCAATTGTCCGGAGAACTCTGCGTTCCGTATGACGACTTGGCTGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCATTCTCAGCCGAAGACGAGCTAAAAACGCTCCACCTTCTCTCCGGCACTACCGCCTCCGCCATTGGCACGAAACCCCAGACACCAGAGTCCTCCTCTTCCTCCGAAACGCTGCCACCATTCGCTGCCAACACCTCTCGAAACCCACCATTTTTCCATCCTGAAACTCCGCTCCCGGGTAAAGCCCGGAGCAAGCGTTCCCGCGCTGCTCCCGGGGACTGGTCCACGCGCCTTCTTCACCTGATCACGCCGACTGCTGAACCTGAACAGGTCCAAGCCAAGGCGGTGGCAGCGAAGAGGAGGGAGAGTTCGAATTCGGACTCTTCGGGGCGTAAATGCCTGCACTGCGCCACCGAGAAGACCCCACAATGGCGGACTGGACCAATGGGTCCGAAGACGCTGTGCAATGCTTGTGGAGTGCGGTACAAATCAGGGAGGTTGGTGCCGGAGTACCGACCGGCGGCGAGCCCAACGTTTGTGTCGGCGAAGCACTCCAATTCGCATAGGAAGGTTTTGGAGCTGAGGAGGCAGAAAGAGCTGCAGAGACAGCAACAGCAGCAGATGCTTAGCCATAGTTCAATTTTCGGCGTATCTCACGGCGGAGAAGAGTACTTGATCCACCACCATACTGGTCCAGATTATAGGCACATGATCTAG 1026 0.5624 MFMEMPEYFVGGYFGTGLDQFSTEKRHGDQKPGEPFAIDDLLDFSNADAIMSDGFFDNVAGNSTESSTFTAVDSCNSSNSGGDNHFSSNVGSRGFGDPQLSGELCVPYDDLAELEWLSNFVEDSFSAEDELKTLHLLSGTTASAIGTKPQTPESSSSSETLPPFAANTSRNPPFFHPETPLPGKARSKRSRAAPGDWSTRLLHLITPTAEPEQVQAKAVAAKRRESSNSDSSGRKCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKELQRQQQQQMLSHSSIFGVSHGGEEYLIHHHTGPDYRHMI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0301 341 PIRSF Txn_fac_GATA_plant 19 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi06g0301 341 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Glsi06g0301 341 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Glsi06g0301 341 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Glsi06g0301 341 MobiDBLite consensus disorder prediction 143 167 - -
Glsi06g0301 341 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Glsi06g0301 341 MobiDBLite consensus disorder prediction 143 195 - -
Glsi06g0301 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 293 - -
Glsi06g0301 341 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Glsi06g0301 341 Gene3D - 226 311 IPR013088 GO:0006355|GO:0008270
Glsi06g0301 341 PANTHER GATA TRANSCRIPTION FACTOR 26 310 - -
Glsi06g0301 341 FunFam GATA transcription factor 225 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0301 Glsi-ChrGlsi06 2045958 2047285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0301 34 341 C2C2-Gata Transcription Factor Family AT4G32890 47.319 1.39e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi06g0301 GATA 7.7e-15 CL0167