Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0294 ATGACAGAACCGAGCTGCTCTGAAACTGCTAGCACCTCTACATCCTCACCACCCTCACCGTCCTCGTCTTCTTTACCACATTCTCTCTCAAACTCATCTTCCAAAACCCAGAAAACTGAAACCCGAGAACAGAGCAGACCCAAAAGACCCAGAGACTCTAGCAACCACCCAGTTTACCATGGTGTCCGAATGCGCAGTTGGGGGAAATGGGTGTCTGAAATTCGTGAGCCGCGCAAGAAATCCCGTATCTGGCTTGGTACTTTTGCTACCCCAGAAATGGCAGCTCGAGCCCATGATGTTGCAGCTTTGAGCATTAAAGGCCAGTCAGCCATTCTAAACTTTCCACAAATAGCTGACGTGCTTCCCAGACCAGCCACGTTAACCCCACGTGACATCCAAGCTGCTGCCGCCGCCGCCGCCGCTATGGTTAAGTTCGACCCAGCAGTAAAATCTCCTTCATCATCTTCACAAGGGTCAGGGTCAGGGTCAGGGTCAGAGTCCTCAGAGCTGAGTGAGATAGTGGAATTACCCAACATAGAAGAAGAGAGCTTCGACTCGGTCGACTCAAGATCCGAGTTCATATGGATTGACTCAGTGGACAGTTGGGTATATCCGGGTCTGGGTTCAGAGGAAGTGGAACTGTGCTCCATTTTCTCTGAACAATTTGCACAAGAGAAGTTTATTACAGAGAGCTCAGAGATTCCACTGTGGGAATATTAA 720 0.4972 MTEPSCSETASTSTSSPPSPSSSSLPHSLSNSSSKTQKTETREQSRPKRPRDSSNHPVYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAILNFPQIADVLPRPATLTPRDIQAAAAAAAAMVKFDPAVKSPSSSSQGSGSGSGSESSELSEIVELPNIEEESFDSVDSRSEFIWIDSVDSWVYPGLGSEEVELCSIFSEQFAQEKFITESSEIPLWEY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0294 239 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Glsi06g0294 239 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Glsi06g0294 239 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 185 - -
Glsi06g0294 239 MobiDBLite consensus disorder prediction 149 171 - -
Glsi06g0294 239 MobiDBLite consensus disorder prediction 39 58 - -
Glsi06g0294 239 MobiDBLite consensus disorder prediction 1 38 - -
Glsi06g0294 239 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 MobiDBLite consensus disorder prediction 1 60 - -
Glsi06g0294 239 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Glsi06g0294 239 Gene3D AP2/ERF domain 58 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0294 Glsi-ChrGlsi06 2009535 2010254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0294 25 205 AP2-EREBP Transcription Factor Family AT5G11590 56.122 1.65e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g0294 AP2 2.4e-13 CL0081