Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0278 ATGAACCTGCGCAATAACCCACCCCACACTTCTCACAGTACGCAAGACTTGTTTGCTTCCCCAGCTCTCTCTCTCAGCCTTGCGGGAATCTTCGGCCACGCCGGGCCGGCGCCATCGTGTAACGCAGAGGTTGAGGAGGGGAGCGGTGGGCGGCGAGAGGAGACCGTTGAGAATAGTAGTGAGAACTCCGGGCTCGAAGGAGACGGTGAGCATGATGAGGAGGACAAGAACAAGACGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGTGCTTTTCAAGGAGTCGCCACATCCTGATGAGAAGCAGAGGCAACAACTCAGCAAGCAATTAGGCCTTACTCCTAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCCACACATGAGCGTCATGAAAATTCACTGTTGAAGTCAGAAATTGATAAACTTAGGGAGGAAAATAAGGCTATGAGAGAGAGCATAAACAAAGCTTGTTGCCCCAACTGTGGCATGGCCACCACTACCACAGATCATGCAGCCTTGTCTAACGAACACCAACTACGTATAGAAAATGCCAAACTCAAAGCAGAGTTAGAGAAACTTCGAGTAGCTCTAGGGAAATGCTCGGCAGCAGGGACAAAGTCGCCTTCGAGCTGTGGAGGCAATGACCAAGAGAATAGAAGCTGTTTGGAGTTTTACAGTGGAATCTTCGGACTTGAGAAGTCAAGGATAATGGAGTTAGTTACGCAAGCAATGGAAGAGCTCGTAAAGATGGCTACTATGGAGGAACCATTATGGGTGCGTAGTGTTGAGACTGGTCGTGAAATACTTAACTACGACGAATACATGAAAGAGTTCGTCTCGGTTGAAAACCCTAGCAATGCAAGGCCAAAGAGATCCATCGAAGCCTCAAGGGAGACTGGGGTTGTTATTTTGGATCTCCCTCGTCTTCTTCAATGCTTCTTGGACGTGAATCAATGGAAGGAAATGTTTGCATGCTTGATATCAAAGGCAGCAAGTGTTGATGTTATATGCAATGGAGAAGGTGCTAATAGGAATGGTTCGGTGGAAGTGATGTTTGCGGAGCTGCAAATGCTGACACCAATGGTGGCCACAAGAGAAGTGTATTTTGTGCGGTACTGCAAGCAATTAACTGCTGAACAGTGGGCAATCGTTGATGTATCCTTACACAAAGTACAAGACAGTATTGACGCTTCCCTCCTCAAATGCACAAAACGCCCATCCGGTTGCATCATTGAGGATAAGTACAATGGCCGCTGCAAGGTAATCTGGGTAGAGCACTTAGATTGCCAGAAGAGCACAGTTCACACAATGTATCGCACCATTGTGAACAATGGTCTGGCCTTTGGGGCAAGGCACTGGCTTGCCACACTGCAACTCCAATGCGAACGACTACTTTTCTTCATGGCAATAAATATTCCCATGAAGGATTCAACTGGTGTTGCGACATTGGCTGGGAGGAAAAGCACTCTGACGTTGGCTCAGAGAATGATGTGGAGTTTCTGCCATGCTGTTGGGGCGTCAAGCTTCCATTCATGGACCATGGTTACTAGTAAAACTGGGGAAGTTATAAGGATTAGTTGGAGGAAGAACTTGAATGATCCTGGAAAACCTCTTGGGGTGATTTTGTGTGCGGTTTCTTGTGTATGGCTGCCAGTCTCTCCTCATGTTCTGTTTGATTTCTTGAGGGATGAAGGTCGCCGGAGCGAGTGGGATATGACAAGTGACGGGTCTGTGCAATCTATTGCGAACTTAGCCAAAGGACAAGATCGGGGCAATGCAGTAACCATCCAGACAGTTAAATCAAAAGGTAACAACAGTAGGTGGATTCTGCAAGATAGCTACACAAATGCTTACGAATCAATGGTGGTGTATGCTCCTGTGGACATTACTCGCATGCAATCTGTGATGACAGGATGTGATTCAAGCAATGTTGCTATACTGCCCTCAGGATTCTCTATTCTTCCTGATGGACTCGAGGCAGGGTCATTGGTGATCACTTCAAGGCAAGAAGAAAAGAGCACAGAAGGAGGATCTTTACTTACAATGGCATTCCAGGACCTTGTTAGCACTTCTCCAACAGCTAAGGTCACAAAGGACTCTGTCGAGTCAGTCAGCACTCTTATATCTTGCACATTAAGAAATATCAGAACAAGTTTGCAATGTGAGGATTGCTAG 2214 0.4675 MNLRNNPPHTSHSTQDLFASPALSLSLAGIFGHAGPAPSCNAEVEEGSGGRREETVENSSENSGLEGDGEHDEEDKNKTKKRKKYHRHTAEQIREMEVLFKESPHPDEKQRQQLSKQLGLTPRQVKFWFQNRRTQIKATHERHENSLLKSEIDKLREENKAMRESINKACCPNCGMATTTTDHAALSNEHQLRIENAKLKAELEKLRVALGKCSAAGTKSPSSCGGNDQENRSCLEFYSGIFGLEKSRIMELVTQAMEELVKMATMEEPLWVRSVETGREILNYDEYMKEFVSVENPSNARPKRSIEASRETGVVILDLPRLLQCFLDVNQWKEMFACLISKAASVDVICNGEGANRNGSVEVMFAELQMLTPMVATREVYFVRYCKQLTAEQWAIVDVSLHKVQDSIDASLLKCTKRPSGCIIEDKYNGRCKVIWVEHLDCQKSTVHTMYRTIVNNGLAFGARHWLATLQLQCERLLFFMAINIPMKDSTGVATLAGRKSTLTLAQRMMWSFCHAVGASSFHSWTMVTSKTGEVIRISWRKNLNDPGKPLGVILCAVSCVWLPVSPHVLFDFLRDEGRRSEWDMTSDGSVQSIANLAKGQDRGNAVTIQTVKSKGNNSRWILQDSYTNAYESMVVYAPVDITRMQSVMTGCDSSNVAILPSGFSILPDGLEAGSLVITSRQEEKSTEGGSLLTMAFQDLVSTSPTAKVTKDSVESVSTLISCTLRNIRTSLQCEDC 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0278 737 ProSiteProfiles START domain profile. 242 479 IPR002913 GO:0008289
Glsi06g0278 737 SMART HOX_1 81 143 IPR001356 GO:0003677
Glsi06g0278 737 SUPERFAMILY Bet v1-like 244 476 - -
Glsi06g0278 737 SUPERFAMILY Bet v1-like 506 711 - -
Glsi06g0278 737 Pfam Homeodomain 82 137 IPR001356 GO:0003677
Glsi06g0278 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 732 IPR042160 -
Glsi06g0278 737 MobiDBLite consensus disorder prediction 30 88 - -
Glsi06g0278 737 FunFam Homeobox-leucine zipper protein HDG1 68 155 - -
Glsi06g0278 737 FunFam Homeobox-leucine zipper protein GLABRA 2 251 475 - -
Glsi06g0278 737 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Glsi06g0278 737 CDD homeodomain 86 137 IPR001356 GO:0003677
Glsi06g0278 737 CDD START_ArGLABRA2_like 246 475 - -
Glsi06g0278 737 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Glsi06g0278 737 Pfam START domain 254 476 IPR002913 GO:0008289
Glsi06g0278 737 Coils Coil 138 165 - -
Glsi06g0278 737 MobiDBLite consensus disorder prediction 46 79 - -
Glsi06g0278 737 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Glsi06g0278 737 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Glsi06g0278 737 SMART START_1 251 476 IPR002913 GO:0008289
Glsi06g0278 737 Coils Coil 189 209 - -
Glsi06g0278 737 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Glsi06g0278 737 Gene3D - 68 151 - -
Glsi06g0278 737 Gene3D - 251 471 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0278 Glsi-ChrGlsi06 1894644 1902422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0278 80 737 Homeobox Transcription Factor Family AT1G79840 63.623 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi06g0278 START 3.2e-53 CL0209