Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0260 ATGTCGTCACTGTCTCGGCCAACTGACTCCCCCTTTCCTCCTCCTCTGCCGCCTGCAACCACCAATGATACCTCTCCTCCGGCGCCGTCAACTACTACTACTCCGAATGATTCCACTCCGCCTCCGCCTCCGCCTCCGCCGCCCCAGTCGCTGACGCCCTCGTCATCGCCGGTTGAGGGGATGTCAAGGGCTACAGTAGTTGGATTAGTTATGGGGACTGTGTTGGGAGGGTTGCTCATGCTGGTTTTTGTGGGCATTTGCGCCTTTTGCTATAAAGGGAAGAAGCGGAAAGAGATGAAACGTTATGATTTTGAAAACTATTCTGCTGCTCCACCACAACAACCGAAAGCCGACCAGCTTGGTAGTCCAGCTCAGCATTGGCAACCGACTATTCCTCGTCCAACAGCTGTTAGTGTAACAATGCCTCCAAAACTAACTCCAACCCCTGGATTTGGGTCGAATCAGCCACTGTCATCCATTAATGGCCCCGCTCCACCAGTGCAATCATCAACCAGCAGTAGTTTGGGTTCTGAGAGGCCATATCTTGCACCATCACCTGGCATTGCCTTGGGACTATCACAAAGTGCATTTACATATGAAGAATTAGTAATCGCAACAAATGGGTTCTCTAGCTCTAATCTTCTTGGTCAAGGAGGTTTTGGCTACGTCCATAAAGGAGTTCTTCCAAATGGAAAAACTGTAGCAATTAAGCAGCTGAAATCTGGGAGTGGACAGGGGGAGCGTGAGTTCCAGGCAGAAGTTAAGGTCATTAGCCGTGTCCATCACAGATATCTTGTTTCCCTTGTTGGATACTGCATGGCTGGGGCCCAGAGGATGCTTGTTTATGAGTTTCTCCCCAATAATACCTTAGAATTTCATTTGCACGGAAAGGAAAGACCAACTATGGACTGGTCAACAAGGATGATGATTGCTATTGGATCAGCAAAAGGATTGGCTTATCTGCATGAGGACTGTCAGCCCAAAATCATACACCGTGACATCAAGGCATCTAACATTCTGCTTGATAATAATTTTGAGGCAAAGGTAGCAGATTTTGGACTTGCCAAATTTTCATCAGATACTGATACCCATGTCTCTACTCGAGTAATGGGAACTTTTGGATATTTGGCTCCTGAATATGCTGCTAGTGGAAAACTCACTGATAAGTCAGATGTCTTCTCCTTTGGCGTTGTGCTTCTGGAGTTGATTACTGGACGAAAACCTGTTGATAAAGCTGAGTCTTTCATAGATGACAGCATGGTTGAATGGGCAAGACCTTTGCTATCCCAAGCTTTGGAAAATAAAAACTTTGATGCTCTTGCTGATCCAAGGTTGCAGAAGAATTACAACCCTGACGAGATGCTTCGAATGATTGCTTGTGCTGCAAATTGTGTGAGCCATTCAGCCCGGCGTCGGCCTCGAATGAGTCAGGTAGTTCGAGCTCTAGAAGGAAATATTTCTCTGGATGATCTAAACGAGGGGAGCACACCTGGGCACAGCAGAGTATTCGGTTCCTTTGAGAGTTCAAGTTATGATACTGGCCAATACAATGAAGACCTAAAGAATTTCAGGAAGCTGGCACTAGAAGGCCAAGAGCAAGGCACCAGTGAGTACAGTGGACCCAGCAGTGAGTATGGTCATCATCCATCTGCCTCCAGCAGTTCAGGCCAGCAAAATACGCAAGAGATGGAAATGGGGAATAAGAAGAGTTACACTGGTCCAATCCGCGTATTATTAAAGGTTATAATCCTCGGAGATAGCGGGGTTGGTAAAACATCACTCATGAATCAATATGTGAATCGCAAGTTTAATACTCAGTATAAGGCTACAATTGGTGCTGATTTTCTTACCAAAGAAGTTCATGTTGAAGATAGGCTATTCACATTGCAGATTTGGGATACTGCTGGTCAAGAGAGATTTCAGAGTCTTGGTGTGGCTTTCTACCTCGGTGCAGACTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGACAATCTTAACCACTGGCGAGAAGAATTTCTGATTCAGGCTAGTCCTTCTGACCCTGAAAACTTCCCATTTGTTGTCTTGGGGAACAAGATAGACGTTGAGGGTGGGAATAGCCGAGTTGTTTCTGCAAAGAAAGCAAGGTCATGGGGCGCTTCGAAGGGAAATATACCATACTTCGAGACCTCTGCAAAAAAAGGATTTAATATAGATGCCGCTTCCCAGTGTATAGCCAAAATTGCACTAAAGAATGAGCCTCAAGAAGAAATATACTTACCTGGCGATTGA 2283 0.4564 MSSLSRPTDSPFPPPLPPATTNDTSPPAPSTTTTPNDSTPPPPPPPPPQSLTPSSSPVEGMSRATVVGLVMGTVLGGLLMLVFVGICAFCYKGKKRKEMKRYDFENYSAAPPQQPKADQLGSPAQHWQPTIPRPTAVSVTMPPKLTPTPGFGSNQPLSSINGPAPPVQSSTSSSLGSERPYLAPSPGIALGLSQSAFTYEELVIATNGFSSSNLLGQGGFGYVHKGVLPNGKTVAIKQLKSGSGQGEREFQAEVKVISRVHHRYLVSLVGYCMAGAQRMLVYEFLPNNTLEFHLHGKERPTMDWSTRMMIAIGSAKGLAYLHEDCQPKIIHRDIKASNILLDNNFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSFGVVLLELITGRKPVDKAESFIDDSMVEWARPLLSQALENKNFDALADPRLQKNYNPDEMLRMIACAANCVSHSARRRPRMSQVVRALEGNISLDDLNEGSTPGHSRVFGSFESSSYDTGQYNEDLKNFRKLALEGQEQGTSEYSGPSSEYGHHPSASSSSGQQNTQEMEMGNKKSYTGPIRVLLKVIILGDSGVGKTSLMNQYVNRKFNTQYKATIGADFLTKEVHVEDRLFTLQIWDTAGQERFQSLGVAFYLGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVEGGNSRVVSAKKARSWGASKGNIPYFETSAKKGFNIDAASQCIAKIALKNEPQEEIYLPGD 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0260 760 NCBIfam small GTP-binding protein domain 580 742 IPR005225 GO:0005525
Glsi06g0260 760 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 77 539 IPR047117 -
Glsi06g0260 760 SMART rab_sub_5 579 749 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 108 179 - -
Glsi06g0260 760 SMART serkin_6 209 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0260 760 ProSitePatterns Protein kinases ATP-binding region signature. 215 237 IPR017441 GO:0005524
Glsi06g0260 760 SUPERFAMILY Protein kinase-like (PK-like) 189 482 IPR011009 -
Glsi06g0260 760 SMART ran_sub_2 584 757 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 112 135 - -
Glsi06g0260 760 ProSiteProfiles small GTPase Rho family profile. 572 746 - -
Glsi06g0260 760 SMART ras_sub_4 576 749 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 33 53 - -
Glsi06g0260 760 FunFam Proline-rich receptor-like protein kinase PERK1 285 493 - -
Glsi06g0260 760 FunFam proline-rich receptor-like protein kinase PERK1 187 284 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 147 179 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 8 24 - -
Glsi06g0260 760 PRINTS Transforming protein P21 ras signature 620 642 - -
Glsi06g0260 760 PRINTS Transforming protein P21 ras signature 686 699 - -
Glsi06g0260 760 PRINTS Transforming protein P21 ras signature 602 618 - -
Glsi06g0260 760 PRINTS Transforming protein P21 ras signature 579 600 - -
Glsi06g0260 760 PRINTS Transforming protein P21 ras signature 724 746 - -
Glsi06g0260 760 SMART rho_sub_3 581 749 IPR001806 GO:0003924|GO:0005525
Glsi06g0260 760 ProSiteProfiles Protein kinase domain profile. 209 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0260 760 Pfam Protein tyrosine and serine/threonine kinase 212 482 IPR001245 GO:0004672|GO:0006468
Glsi06g0260 760 Gene3D - 575 757 IPR027417 -
Glsi06g0260 760 Gene3D Phosphorylase Kinase; domain 1 187 284 - -
Glsi06g0260 760 ProSiteProfiles small GTPase Rab1 family profile. 568 760 - -
Glsi06g0260 760 Pfam Ras family 580 744 IPR001806 GO:0003924|GO:0005525
Glsi06g0260 760 ProSiteProfiles small GTPase Ras family profile. 573 760 IPR001806 GO:0003924|GO:0005525
Glsi06g0260 760 MobiDBLite consensus disorder prediction 530 565 - -
Glsi06g0260 760 MobiDBLite consensus disorder prediction 1 59 - -
Glsi06g0260 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Glsi06g0260 760 MobiDBLite consensus disorder prediction 532 565 - -
Glsi06g0260 760 FunFam Ras-related protein Rab7 572 759 - -
Glsi06g0260 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 755 IPR027417 -
Glsi06g0260 760 CDD Rab7 579 752 - -
Glsi06g0260 760 Gene3D Transferase(Phosphotransferase) domain 1 285 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0260 Glsi-ChrGlsi06 1789325 1797225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0260 16 528 Trihelix Transcription Factor Family AT1G70460 48.566 4.60e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi06g0260 PK_Tyr_Ser-Thr 1.8e-47 CL0016