Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0247 ATGACCGAAATTCTTCGATCTTCTTTTCTAGTCCTTCTCCTTCCTTTCCTATTCCTAGTAAAGATTGCCCCCTCTGAAGCTGACGACATTGCCGTTTACTGGGGTCAAAACGGCAACGAGGGAAGTCTGACAGAAACATGTGCAACAGGAAGTTACTCTTTTGTAATCGTAGGCTTCCTTTCCACCTTTGGGAATGGCCAAACCCCTCAACTCAACCTGGCAGGTCACTGTGACCCTTCTTCATCTGGGTGTACTGCGGTTGGCAAAGATATCAGTTATTGTCAAGAACGAGGGATCAAGGTGATGCTTTCTCTTGGAGGAGTAGCTGGGGCATACACTCTAACTTCCTCTATGGATGCTCAAGATGTCTCTGATTACTTGTGGAGCAATTTCTTAGGTGGCACTGGGAGCTCATCTTCCCGCCCACTTGGAGACGCCATTTTAGATGGCATAGATTTTGATATAAAGTTATCCACATCATACTTGGAGGATCTTGCACGTTACCTCAAGTCACACAGCACAGCAAGACAAAAAGTGTACTTAACTGCAGCACCTCAATGCCCGTTTCCGGATGCTACACTTGAGACTGCTCTTGATACGGGTCTTTTTGACTATGTCTGGGTACAATTCTACAACAATCGTCCCTGTAATTATAGAGAAGCCAATTCTAATAACTTTTTCAAAGCATGGAACCAATGGACAACATTAAAAGGGCCGAAAATATTCTTGGAGTTGCCGGCATCTCCGCAAGCAACTGAGACCGGCTATGTTCCTGTTAATGTGTTAATCTCTAGGATACTTCCTATTCTAAAGAAGTCTCCTAACTATGGAGGTGTCATGTTGTGGTCAAGGTACGAAGATAAACTGAGTGGATACAGTACCGACATTCAAACTAGTCGTCTGTGCACATACCAAAGCCCTCCCAAATGCAGGAGCGGTGACAGTGGCTTTGTGGGACGTTTTGGTTACATGTCCACTGATAGTTTTAAGGTCTACGAAAGTGAGAACCTTGGTGAGCAGTGCTGTGAAACCATATGCAGGAATAATTGTTCTTGTGACGCTTATGCACCAGTGAATCAGGTTAATAATACTGGGTGTCAGATATGGGGTAAAGGAACCAGGTTTATTAATGCTTCTGGGGCAAAAGGGCAGCAAATTTATGTTGTTGAACACAAAGTAAACAGGTGGTGGATATGGCTTATCGTTGGGATGGGAGCAGCCCTAGCATTACCTCTGATCTGCTACTTATGCTTTGCCTTATGGAGAAAATACAAAGCAGAAGTGGATAGAAAAATGAAGCAAAAGAACATATTACATGAAATTGGAGGTAATGCAATGCTTTCCATGGTGTACGGCAAAGCCAAAAAGAGTAAGAAACATGGAAAGTCAAGCAATGAGGTTGAAATATTCAGTTTTGAAAGCGTTGTGGCTGCCACAAACAATTTCTCATCTTCTAACAAGTTAGGAGAGGGTGGTTTTGGTCCTGTTTATAAGGGAATACTAACTGATGGACAAGAGGTAGCAATAAAGCGACTTTCTAAAAGTTCAGGACAAGGGCTTATAGAGTTCAAGAATGAAGCTAAACTCATGGCCAAACTTCAGCACACTAATCTTGTGAGGCTTTTAGGGTTTTGCATCCAAAGAGATGAAAGAATATTAGTCTATGAGTACATGTCCAACAAGAGCTTAGACTTCTACTTATTTGATGCAAGTAGAAGGAATGCATTAGACTGGAAAAAACGATTTAACATTATTGAAGGCATTGCTCAAGGACTTCTCTATCTTCACAAGTATTCAAGACTAAAAGTGATACATCGTGACTTGAAGGCAGGAAATATATTACTTGATGAAGAAATGAATCCTAAAATAGCTGATTTTGGCTTGGCTCGAATTTTCGGTATGAGAGGATCTGAAGAAAATACAAATAGAATCGTTGGTACATATGGTTACATGTCTCCAGAATATGCAATCAATGGTGTTGTGTCAATCAAAATAGATGTATTTAGCTTTGGTGTACTGCTACTGGAGATTCTTAGTGACAAGAAGAATAATAGCCGCTATAATTTAGAACATCCACTAAATCTCATAGGATATGCATGGCAACTCTGGAATGAAGGTAGAGCTTTAGAGCTAATAGATTCAGAAATAAGTGAATCAAATACTCAAGACAAAGTGCTGAGAAGTATTCACATTGGCCTCTTGTGTGTACAAGATCAAGCAAATGACAGACCTTCTATGTTAGATGTCGTTTCTTTTCTATCAAATGATACCATTCAACTTGCCCAACCAAAGCAGCCGGCATTCTTTACCAGTGTGATCGTGGAAGAGTCAGAGTTACATAATAGCAGGCAAGAGCATTATTCCATAAATGGAATAACAATTTCTGCTATGGATGGTAGATAA 2403 0.4078 MTEILRSSFLVLLLPFLFLVKIAPSEADDIAVYWGQNGNEGSLTETCATGSYSFVIVGFLSTFGNGQTPQLNLAGHCDPSSSGCTAVGKDISYCQERGIKVMLSLGGVAGAYTLTSSMDAQDVSDYLWSNFLGGTGSSSSRPLGDAILDGIDFDIKLSTSYLEDLARYLKSHSTARQKVYLTAAPQCPFPDATLETALDTGLFDYVWVQFYNNRPCNYREANSNNFFKAWNQWTTLKGPKIFLELPASPQATETGYVPVNVLISRILPILKKSPNYGGVMLWSRYEDKLSGYSTDIQTSRLCTYQSPPKCRSGDSGFVGRFGYMSTDSFKVYESENLGEQCCETICRNNCSCDAYAPVNQVNNTGCQIWGKGTRFINASGAKGQQIYVVEHKVNRWWIWLIVGMGAALALPLICYLCFALWRKYKAEVDRKMKQKNILHEIGGNAMLSMVYGKAKKSKKHGKSSNEVEIFSFESVVAATNNFSSSNKLGEGGFGPVYKGILTDGQEVAIKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVRLLGFCIQRDERILVYEYMSNKSLDFYLFDASRRNALDWKKRFNIIEGIAQGLLYLHKYSRLKVIHRDLKAGNILLDEEMNPKIADFGLARIFGMRGSEENTNRIVGTYGYMSPEYAINGVVSIKIDVFSFGVLLLEILSDKKNNSRYNLEHPLNLIGYAWQLWNEGRALELIDSEISESNTQDKVLRSIHIGLLCVQDQANDRPSMLDVVSFLSNDTIQLAQPKQPAFFTSVIVEESELHNSRQEHYSINGITISAMDGR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0247 800 Pfam Protein tyrosine and serine/threonine kinase 485 753 IPR001245 GO:0004672|GO:0006468
Glsi06g0247 800 SUPERFAMILY (Trans)glycosidases 25 295 IPR017853 -
Glsi06g0247 800 Pfam Glycosyl hydrolases family 18 30 287 IPR001223 GO:0005975
Glsi06g0247 800 CDD GH18_hevamine_XipI_class_III 29 296 IPR045321 -
Glsi06g0247 800 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 558 761 - -
Glsi06g0247 800 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 448 557 - -
Glsi06g0247 800 Pfam Domain of unknown function (DUF3403) 755 800 IPR021820 GO:0004674
Glsi06g0247 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Glsi06g0247 800 FunFam Acidic endochitinase SE2 28 300 - -
Glsi06g0247 800 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 303 IPR001223 GO:0005975
Glsi06g0247 800 Gene3D Glycosidases 28 300 - -
Glsi06g0247 800 ProSiteProfiles Protein kinase domain profile. 482 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0247 800 Gene3D Transferase(Phosphotransferase) domain 1 558 767 - -
Glsi06g0247 800 CDD STKc_IRAK 488 753 - -
Glsi06g0247 800 Pfam PAN-like domain 330 371 IPR003609 -
Glsi06g0247 800 Gene3D Phosphorylase Kinase; domain 1 453 557 - -
Glsi06g0247 800 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 293 777 - -
Glsi06g0247 800 SMART serkin_6 482 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0247 800 SUPERFAMILY Protein kinase-like (PK-like) 465 776 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0247 Glsi-ChrGlsi06 1684105 1687615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0247 470 769 Receptor kinase-like Gene Family AT3G45860 59.272 3.80e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi06g0247 PK_Tyr_Ser-Thr 9.8e-47 CL0016