Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0246 ATGGTAGAAGCCAATGGAGGGTCAGGCTCATGCGGGACCACCGGTTGCGTGACGGATCTCAACCGCCAGTGCCCGCCCGAATTAAGGCCGGACGGTGGCAATGGCTGTAACAGTGCTTGTGGAGCTAACTATACAGTCACATTTTGTGCTGTTTCTCTCCCAGGGTCTACAGGAGATTCTGGGGAACAAGGGCAACACAAGCACAAAGTAAACAGGTGGTGGATATGGCTTATCGTTGGGATGGGAGCACCCCTAACATTGACTCTGATCTGCTACTTATGCTTTGCCTTGTGGAGAAAATACAAAGCAGAAGTGGATAGAAAAATGAAGCAAAAGAACATATTACATGAAATTGGAGGTAATGCAATGCTTTCCATGGTGTACGGAAAAGCCAAAAAGAGTAAGAAACATGGTAAGTCAAGCAATGAGGTTGAAATATTCAGTTTTGAAAGCATTGTGGCTGCCACAAACAATTTCTTAGCTTCTAACAAGCTTGGGGAGGGCGGTTTTGGTCCTGTTTATAAGGGAACACTAACTGATGGACAAGAGGTAGCAATAAAACGACTTTCTAAAAGTTCAGGACAAGGGCTTATAGAGTTCAAGAATGAAGCTAAACTCATGGCCAAACTCCAGCACACTAATCTTGTGAGACTTTTAGGGTTCTGCATTCAAAGAGATGAAAGAATATTAGTCTATGAGTATATGTCTAACAAGAGTTTAGACTTCTACCTATTTGATGCAAGTAGAAGGAATGCATTGGATTGGGAAAAAAGATTGAACATCATTGAAGGCATTGCTCAAGGACTTCTTTATCTTCACAAGTATTCAAGACTAAAAGTGATACATCGTGACCTGAAGGCAGGCAATATATTACTTGATGAAGAAATGAATCCTAAAATATCTGATTTTGGGTTGGCTCGAATTTTCGGTCTGAAAGGATCTGAAGAAAACACAAATAGAATTGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATCAATGGTATTGTGTCAATTAAAACAGATGTATTCAGTTTTGGTGTACTGTTGCTGGAGATTCTTAGCGGTAAGAAGAATAATAGTCGCTATGATTTAGAAAGTCCACTAAATCTCATAGGATATGCATGGCAGCTCTGGAATGAAGGTAGAGCCTTAGAGCTAATAAATTCAGAAATTAGTGGATCAAATACTCAAAACAAAGTGCTGAGAAGTATTCACATTGGCCTCTTGTGCGTACAAGATCAAGCAAATGATAGACCTTCCATGTTTGATGTTGTTTCTTTTCTATCAAATGATACCATTCAACTTGCCCAACCAAACCAGCCAGCATTCTTTATCAGTGTGATCGTGGAAGAGTCAGAGTTGCATAATAGCAGGCAAGAACATTATTCCATAAATAGAGTAACAATTTCTGCTATGGATGGTAGATAA 1434 0.4003 MVEANGGSGSCGTTGCVTDLNRQCPPELRPDGGNGCNSACGANYTVTFCAVSLPGSTGDSGEQGQHKHKVNRWWIWLIVGMGAPLTLTLICYLCFALWRKYKAEVDRKMKQKNILHEIGGNAMLSMVYGKAKKSKKHGKSSNEVEIFSFESIVAATNNFLASNKLGEGGFGPVYKGTLTDGQEVAIKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVRLLGFCIQRDERILVYEYMSNKSLDFYLFDASRRNALDWEKRLNIIEGIAQGLLYLHKYSRLKVIHRDLKAGNILLDEEMNPKISDFGLARIFGLKGSEENTNRIVGTYGYMSPEYAINGIVSIKTDVFSFGVLLLEILSGKKNNSRYDLESPLNLIGYAWQLWNEGRALELINSEISGSNTQNKVLRSIHIGLLCVQDQANDRPSMFDVVSFLSNDTIQLAQPNQPAFFISVIVEESELHNSRQEHYSINRVTISAMDGR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0246 477 ProSiteProfiles Protein kinase domain profile. 159 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0246 477 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 477 - -
Glsi06g0246 477 Pfam Domain of unknown function (DUF3403) 432 477 IPR021820 GO:0004674
Glsi06g0246 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Glsi06g0246 477 SMART serkin_6 159 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0246 477 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 125 234 - -
Glsi06g0246 477 SUPERFAMILY Osmotin, thaumatin-like protein 4 52 IPR037176 -
Glsi06g0246 477 SUPERFAMILY Protein kinase-like (PK-like) 142 454 IPR011009 -
Glsi06g0246 477 CDD STKc_IRAK 165 430 - -
Glsi06g0246 477 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 235 438 - -
Glsi06g0246 477 Gene3D Phosphorylase Kinase; domain 1 130 234 - -
Glsi06g0246 477 Pfam Protein tyrosine and serine/threonine kinase 162 430 IPR001245 GO:0004672|GO:0006468
Glsi06g0246 477 Gene3D Transferase(Phosphotransferase) domain 1 235 443 - -
Glsi06g0246 477 Gene3D Thaumatin 1 73 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0246 Glsi-ChrGlsi06 1671840 1675322 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0246 147 447 Receptor kinase-like Gene Family AT3G45860 59.076 4.81e-126 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi06g0246 PK_Tyr_Ser-Thr 1.3e-48 CL0016