Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0231 ATGGATGACACCGAGGATGATGCAAGGCAACCCCCTAATCTGTATGGTGTTAATCGCCACCAAGGTTATGGTTATCTGAATGATCACAAACATCCTGTTAGAAGTTCTCCATATTCTCAGCCAGTTACAAATGAGTATGTGGAAGATAATAATGACGATGAGGACGAAGAAGATGTGGAACAGTTAGAAGAGGAAGAAGAGGATTATGTTGATCAAAGTAACAACTTTCATTCTTTGCAAAATGATGTTGGTGACAATGATGATGAGGAAGATGAAGAGGGTGGAGATGGAGATGAAGATGATGATGATGATAAGCAGAAAAATTACAACAGGAGAGTTGAAGATGATTTAGAATGGAATCCAAAAAAGAGAAAGCTGAAGAGCTTGATTTCAACTTACGAATTTGCCCCTCGTGTACCAGCACCAGCGGCTGCAGCTCACTCAGGCCCAAAACCATCTTTTGGTGGCAGGAATTCCCTTACTGACTGGACTGAGCATGAGACATTTGTTCTTCTTGATGCTTGGGGTGACCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCCGAGCAATGGCAAGAAGTTGCAGAAAGGGTATCAGAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGTAAAAATCGTCTAGACACATTAAAGAAAAAGTACAAAAAGGAGAAGACTAAATTAGCAGAAATGGATGGTGGAACAAGCAAATGGGTTTATTTCAAAAGGATGGATAAACTAATGTCTTCTCCTCCACAGCAAGGAGGTCTCTCTTGTGGTTTTGACTCAGGTGAGTATGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAGATGAGAGATAGTCCAGGGAATTCAGAATCTACCGGTGAAGAAGAGTTAAATGGACTTCGTCCAAGGAAAAAAAGGTACGGAGGGGACAATGACGAAACTTCTTCCTTCAGATTGCTTGCTAATTCCATTCAGAAATTCAGTGACATATACGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGGTGGAATTGGAAAAGATGAGGATGGATTTCCATAAAGAATTGGAAACACAGAAGAGGCAGATTTTAGAGAGGGTGCAGAGCGAGATTGCCCAATTGCAGCAGAGAGATGATGAGGAGAATGATGATTCTGTTGAGAATGGTGGGTGA 1185 0.4084 MDDTEDDARQPPNLYGVNRHQGYGYLNDHKHPVRSSPYSQPVTNEYVEDNNDDEDEEDVEQLEEEEEDYVDQSNNFHSLQNDVGDNDDEEDEEGGDGDEDDDDDKQKNYNRRVEDDLEWNPKKRKLKSLISTYEFAPRVPAPAAAAHSGPKPSFGGRNSLTDWTEHETFVLLDAWGDRFLQHGRKSLRSEQWQEVAERVSEVSKIERTDTQCKNRLDTLKKKYKKEKTKLAEMDGGTSKWVYFKRMDKLMSSPPQQGGLSCGFDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEEELNGLRPRKKRYGGDNDETSSFRLLANSIQKFSDIYEKIENSKRQQMVELEKMRMDFHKELETQKRQILERVQSEIAQLQQRDDEENDDSVENGG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0231 394 Gene3D - 163 225 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 1 118 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 374 394 - -
Glsi06g0231 394 Coils Coil 52 82 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 300 316 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 283 318 - -
Glsi06g0231 394 ProSiteProfiles Myb-like domain profile. 163 220 IPR001005 -
Glsi06g0231 394 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 152 385 IPR044823 -
Glsi06g0231 394 FunFam trihelix transcription factor ASIL2 163 225 - -
Glsi06g0231 394 Coils Coil 335 388 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 47 70 - -
Glsi06g0231 394 Pfam Myb/SANT-like DNA-binding domain 162 249 IPR044822 -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 104 118 - -
Glsi06g0231 394 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0231 Glsi-ChrGlsi06 1559065 1560249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0231 163 384 Trihelix Transcription Factor Family AT1G54060 33.948 1.70e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi06g0231 Myb_DNA-bind_4 2.7e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0231 06 1559065 1560249 Glsi06g0231 06 1559065 1560249 ECH